PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_745_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GRAS

Protein Properties

Length: 763aa MW: 86628.2 Da PI: 4.9613

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_745_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	362.4	6.3e-111	376	745	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 +lLl cA+av+++d + + +lL ++++++sp gd +qRla++f++ L+arl++++ ++y l+ +++s +e ++a++++ e+ P+ k++ + a Neem_745_f_3 376 STLLLLCAQAVAADDRRTTGELLRQIRQHSSPFGDGTQRLAHCFANSLEARLVGTGVQIYTDLSFKRKS---PAELIKAYQVYIEALPFNKIAIIFA 469 579**********************************************************999998...89******************* PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 N +I+e +e+++++HiiDf+i +G+QWpaL+ L++R++gpp+lR+Tg++ p +g +e++eetg+rLa+++e+++vpfe+n+ +ak++e+++le+ Neem_745_f_3 470 NDTIMELAEKATTLHIIDFGIWHGFQWPALIYRLSKRNSGPPKLRMTGIDFPLPGfrPAERVEETGRRLARYCERFKVPFEYNA-IAKKWENIKLED 565 ************************************************99999***********************.7******* PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 L++k +E+laVn+ ++l++llde+v ++s++d+vL+l+++++P++++++ + + ns+ Fl+rf eal y+sa+fd +e+++pre+e r + E+e+ Neem_745_f_3 566 LKIKDNEVLAVNCLYRLKNLLDETVVVNSPKDAVLNLIRRTNPDIFIHAVLNGSFNSPFFLTRFREALFYFSAMFDVWEETVPREDEMRLMFEEEFY 662 ********************************************************************************************* PP GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 gre+ nvvaceg er+er et+++W r ++aGF+++pl+ + +k+ + +l+ +s ++ +e+++++++gWk++ L++ S W Neem_745_f_3 663 GREAINVVACEGLERVERPETYKQWIVRNTRAGFRQLPLDPQLMKKLRGMLKAGYSSDFTFDEDKHWMLQGWKGKILYASSTW 745 *************************************************99888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.834	349	726	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.2E-108	376	745	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 763 aa Download sequence Send to blast
MDSQDSQFTR FPNSVSGFNF NRGTVFPRSN EYSNFESGAE FNFNDPSLDV RFMDNLAVPP 60 EPDFFVPGQS SSVNQEGELS SYSDDNDFSE IVLKYISQVL MEENMEQKPS MFHDPLALQA 120 TEKSLYGVLG ENYPLCSDNP PPYNVENPVD FSSSGFSDLA CNSSSSSGTS HLVDPSWSGD 180 YGESKPSFSQ VPFPNDLVFQ STTKSSSQSS GNFQNSFVTN VNNGFLASPA NELLVPNLFT 240 DSELLSQFKR GVEEASKFLP KGNPLVRDLE AEKVERDQPP IVLRGKKNHE REDRDLEEER 300 SNKQSAVYMD ESELSEMFDR VLIGNERKES VCVLDETAQN YGTKKTQQQN RQTNGSSGEK 360 NRAKKPANKN DVVDLSTLLL LCAQAVAADD RRTTGELLRQ IRQHSSPFGD GTQRLAHCFA 420 NSLEARLVGT GVQIYTDLSF KRKSPAELIK AYQVYIEALP FNKIAIIFAN DTIMELAEKA 480 TTLHIIDFGI WHGFQWPALI YRLSKRNSGP PKLRMTGIDF PLPGFRPAER VEETGRRLAR 540 YCERFKVPFE YNAIAKKWEN IKLEDLKIKD NEVLAVNCLY RLKNLLDETV VVNSPKDAVL 600 NLIRRTNPDI FIHAVLNGSF NSPFFLTRFR EALFYFSAMF DVWEETVPRE DEMRLMFEEE 660 FYGREAINVV ACEGLERVER PETYKQWIVR NTRAGFRQLP LDPQLMKKLR GMLKAGYSSD 720 FTFDEDKHWM LQGWKGKILY ASSTWLPAED LTSGRGRLAN SVS

Sequence ? help Back to Top

Protein Sequence Length: 763 aa Download sequence Send to blast

MDSQDSQFTR FPNSVSGFNF NRGTVFPRSN EYSNFESGAE FNFNDPSLDV RFMDNLAVPP  60
EPDFFVPGQS SSVNQEGELS SYSDDNDFSE IVLKYISQVL MEENMEQKPS MFHDPLALQA  120
TEKSLYGVLG ENYPLCSDNP PPYNVENPVD FSSSGFSDLA CNSSSSSGTS HLVDPSWSGD  180
YGESKPSFSQ VPFPNDLVFQ STTKSSSQSS GNFQNSFVTN VNNGFLASPA NELLVPNLFT  240
DSELLSQFKR GVEEASKFLP KGNPLVRDLE AEKVERDQPP IVLRGKKNHE REDRDLEEER  300
SNKQSAVYMD ESELSEMFDR VLIGNERKES VCVLDETAQN YGTKKTQQQN RQTNGSSGEK  360
NRAKKPANKN DVVDLSTLLL LCAQAVAADD RRTTGELLRQ IRQHSSPFGD GTQRLAHCFA  420
NSLEARLVGT GVQIYTDLSF KRKSPAELIK AYQVYIEALP FNKIAIIFAN DTIMELAEKA  480
TTLHIIDFGI WHGFQWPALI YRLSKRNSGP PKLRMTGIDF PLPGFRPAER VEETGRRLAR  540
YCERFKVPFE YNAIAKKWEN IKLEDLKIKD NEVLAVNCLY RLKNLLDETV VVNSPKDAVL  600
NLIRRTNPDI FIHAVLNGSF NSPFFLTRFR EALFYFSAMF DVWEETVPRE DEMRLMFEEE  660
FYGREAINVV ACEGLERVER PETYKQWIVR NTRAGFRQLP LDPQLMKKLR GMLKAGYSSD  720
FTFDEDKHWM LQGWKGKILY ASSTWLPAED LTSGRGRLAN SVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	6e-49	382	747	25	379	Protein SCARECROW
5b3h_D	6e-49	382	747	25	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021647651.1	0.0	scarecrow-like protein 14 isoform X3
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2K1Z234	0.0	A0A2K1Z234_POPTR; Uncharacterized protein
STRING	POPTR_0009s03790.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM358	27	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]