PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_7545_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

ZF-HD

Protein Properties

Length: 190aa MW: 21370.2 Da PI: 9.9204

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_7545_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	88.4	7.2e-28	34	87	4	58
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 + Y+eC++NhAa++G +a+DGCgEf+++ g++gt+ a+ CaACgCHR+FHR+ev Neem_7545_f_2 34 TSYRECRRNHAAAIGRYAFDGCGEFLKA-GRDGTKGAFLCAACGCHRSFHRKEVI 87 78***********************9.999******************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	4.0E-15	32	86	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.7E-25	34	86	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.519	36	85	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	9.3E-23	36	86	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	5.2E-23	99	170	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.09E-15	105	169	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.118	108	172	IPR001356	Homeobox domain
TIGRFAMs	TIGR01565	3.6E-23	111	166	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MSTSRINPCN NAAANTNTPP QLFNYAAVPE PAATSYRECR RNHAAAIGRY AFDGCGEFLK 60 AGRDGTKGAF LCAACGCHRS FHRKEVIDFQ NGDRLSGEKT TMEIREKGRG KTKRTKITEE 120 QRSKMTRFAE KLGWKPQKHD EEDVEKFCGE VGISRKMFKV WLSNNRRRMA AEKCSAVIGE 180 KNQEGVKESI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	5e-16	114	166	21	73	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006431739.1	1e-61	zinc-finger homeodomain protein 5
Refseq	XP_006471248.1	1e-61	zinc-finger homeodomain protein 5-like
Swissprot	Q9SB61	1e-35	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A2H5Q928	3e-60	A0A2H5Q928_CITUN; Uncharacterized protein
TrEMBL	V4UZS2	3e-60	V4UZS2_9ROSI; Uncharacterized protein
STRING	XP_006471248.1	5e-61	(Citrus sinensis)
STRING	XP_006431739.1	5e-61	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18668	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	1e-32	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]