PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_7585_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 213aa MW: 25024.3 Da PI: 9.6167

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_7585_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	139.6	2e-43	6	138	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 ppGfrF Pt+eelv++yL++k++g++ ++++i+ v+iy+++PwdLp+ ++ + ++w+fF++r++++a+g r+nr t++gyWkatg+ Neem_7585_f_2 6 PPGFRFYPTEEELVSFYLHNKLQGRRedlnRLMDRIIPIVNIYNYNPWDLPQfseyLCHRDPEQWFFFIPRHENEARGGRPNRLTTAGYWKATGSP 101 9***********************6653223347999*******9646653344667***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 v+s ++++vg k+++vfy+grap+g+kt+W m+ey+ Neem_7585_f_2 102 GLVYS-SNRAVGEKRSMVFYRGRAPNGTKTEWKMNEYK 138 *.8899*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-48	3	167	IPR003441	NAC domain
PROSITE profile	PS51005	48.494	5	167	IPR003441	NAC domain
Pfam	PF02365	2.2E-22	6	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MVEEYPPGFR FYPTEEELVS FYLHNKLQGR REDLNRLMDR IIPIVNIYNY NPWDLPQFSE 60 YLCHRDPEQW FFFIPRHENE ARGGRPNRLT TAGYWKATGS PGLVYSSNRA VGEKRSMVFY 120 RGRAPNGTKT EWKMNEYKAI EGEASTSSAN APPRVSSEFS LCRVYKRSKC LRAFDRRPPP 180 PGVIISEPLT QRVAHLDDDH QRRQAHWKVV VTW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-36	6	167	18	165	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-36	6	167	18	165	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-36	6	167	18	165	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-36	6	167	18	165	NO APICAL MERISTEM PROTEIN
3swm_A	5e-36	6	167	21	168	NAC domain-containing protein 19
3swm_B	5e-36	6	167	21	168	NAC domain-containing protein 19
3swm_C	5e-36	6	167	21	168	NAC domain-containing protein 19
3swm_D	5e-36	6	167	21	168	NAC domain-containing protein 19
3swp_A	5e-36	6	167	21	168	NAC domain-containing protein 19
3swp_B	5e-36	6	167	21	168	NAC domain-containing protein 19
3swp_C	5e-36	6	167	21	168	NAC domain-containing protein 19
3swp_D	5e-36	6	167	21	168	NAC domain-containing protein 19
4dul_A	6e-36	6	167	18	165	NAC domain-containing protein 19
4dul_B	6e-36	6	167	18	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007027830.2	1e-106	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	2e-67	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A061EV89	1e-104	A0A061EV89_THECC; NAC domain containing protein 90
STRING	EOY08332	1e-105	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10159	10	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	3e-62	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]