PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7680_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 113aa    MW: 13126.8 Da    PI: 9.6595
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7680_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM86.45.5e-27710229128
            NAM  29 eleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWv 122
                    ++ ++++ev+i+k+eP+dLp+   +  e++ wyfF     k+ ++kr++r+t +g+Wk tgkd+     ++e++g k+ Lvfy+gra +g kt+Wv
  Neem_7680_f_1   7 PV-HTVAEVNICKFEPSDLPQlsPLPPEDQVWYFFNAPVYKNVRSKRTERTTGTGFWKVTGKDR-----GKEEIGFKRNLVFYSGRAANGIKTNWV 96 
                    55.5699************95334445899********************************87.....5667*********************** PP

            NAM 123 mheyrl 128
                     hey+ 
  Neem_7680_f_1  97 THEYHS 102
                    ****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.0421113IPR003441NAC domain
SuperFamilySSF1019411.83E-272107IPR003441NAC domain
PfamPF023657.8E-1325101IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MRGLDFPVHT VAEVNICKFE PSDLPQLSPL PPEDQVWYFF NAPVYKNVRS KRTERTTGTG  60
FWKVTGKDRG KEEIGFKRNL VFYSGRAANG IKTNWVTHEY HSNNATSYQF YVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-19310139139Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024043359.11e-43NAC domain-containing protein 45-like
RefseqXP_024948387.16e-42NAC domain-containing protein 4-like isoform X2
TrEMBLA0A067HF961e-40A0A067HF96_CITSI; Uncharacterized protein
TrEMBLA0A1S8ADV15e-40A0A1S8ADV1_CITLI; NAC domain containing protein (Fragment)
STRINGXP_006491403.12e-40(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1798738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.14e-21NAC domain containing protein 69