PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7738_f_5
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 307aa    MW: 34317.5 Da    PI: 5.6648
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7738_f_5genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.57.8e-30131188359
                    -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+vers++dp  ++itY+ eHnh+
  Neem_7738_f_5 131 DMWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERSSTDPGQFIITYSAEHNHT 188
                    99************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-30116190IPR003657WRKY domain
PROSITE profilePS5081132.948124190IPR003657WRKY domain
SuperFamilySSF1182903.14E-25127190IPR003657WRKY domain
SMARTSM007742.6E-34129189IPR003657WRKY domain
PfamPF031069.9E-25131187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDWDLQAIVR GCSSEISTSV MDIPHPQSCF HPSSLQQDVF FKFPDICEST TILDELEQLY  60
KPFYPQTIIT STTSMSVPSE VKKPKKMRKP QPISISANGT INTDEAAQPK KGKNPQKRVV  120
QQVTADALSC DMWAWRKYGQ KPIKGSPYPR SYYRCSSSKG CLARKQVERS STDPGQFIIT  180
YSAEHNHTHP TRRSSLAGST RNKALTRSTV PAVTSQPGGR VQTVLSPITP PLARSVEDEL  240
VHENIKKEEE GNVFEDGGEE VMPNLSDELF SSLQDLEDLL FDQFTEDISD DKTWFIDESA  300
AITTHGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-181311911880Disease resistance protein RRS1
5w3x_D1e-181311911880Disease resistance protein RRS1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439465.21e-120WRKY transcription factor 22 isoform X2
TrEMBLA0A067GLN81e-119A0A067GLN8_CITSI; Uncharacterized protein
STRINGXP_006476490.11e-119(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60902545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.16e-47WRKY family protein