PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7747_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NF-YC
Protein Properties Length: 244aa    MW: 28229.2 Da    PI: 6.7145
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7747_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC132.41.4e-4160161299
          NF-YC   2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 
                    + +fw++q   i ++t fk nh+lPlarik+i+k++ dvkmisa++P++++kacelfileltlr+wl++ee++rrtl+++dia a+   +i dflv
  Neem_7747_f_2  60 IDMFWNRQlfeIYNTTVFKsNHQLPLARIKRIIKSNGDVKMISADTPIVFAKACELFILELTLRAWLQTEECRRRTLQRCDIARALRLDEILDFLV 155
                    579*****877788999999**************************************************************************** PP

          NF-YC  94 divprd 99 
                    d vp +
  Neem_7747_f_2 156 DFVPCN 161
                    ***987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.87E-2637154IPR009072Histone-fold
PfamPF008082.9E-1682145IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.108.1E-3083159IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MRRPKVDLNQ ALESKSSTPS PQQQQQVHNF MPITPFLLPY HQDEEEAINS CLMQKQKQNI  60
DMFWNRQLFE IYNTTVFKSN HQLPLARIKR IIKSNGDVKM ISADTPIVFA KACELFILEL  120
TLRAWLQTEE CRRRTLQRCD IARALRLDEI LDFLVDFVPC NSHKDDDSDN SSEEINELHP  180
LHPANQVYSP GVDINGKFNP NHDVPQQIVM KPSLTLAEFN HGSTSPRWKA KAEAKVTEMY  240
EKLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-3367159394NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021672515.18e-77nuclear transcription factor Y subunit C-10-like isoform X2
TrEMBLA0A067FAR01e-77A0A067FAR0_CITSI; Uncharacterized protein
TrEMBLA0A2H5NUP01e-77A0A2H5NUP0_CITUN; Uncharacterized protein
STRINGXP_002528069.15e-72(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1809079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-40nuclear factor Y, subunit C2