PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7908_f_5
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ZF-HD
Protein Properties Length: 214aa    MW: 23526.1 Da    PI: 9.6185
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7908_f_5genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer46.48.9e-151312958
    ZF-HD_dimer 29 mpsegee.gtaaalkCaACgCHRnFHRreve 58
                   mps++++ +++++lkCaACgCHRnFHRre+e
  Neem_7908_f_5  1 MPSPTATaTDPTSLKCAACGCHRNFHRREPE 31
                   6777777799******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152310.584129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.2E-10730IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-51432IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466898.97E-20115189IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-29122189IPR009057Homeodomain-like
TIGRFAMsTIGR015656.6E-25128185IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MPSPTATATD PTSLKCAACG CHRNFHRREP EDIINTASLS HPTNANTTAT IEYQPHHRHH  60
PPPPPPAQQT QPPASQRSPN SSSPPPISSS YYPSAPHMLL ALSGNLQSAQ ETMISNLNVN  120
VSSNSSPRKR FRTKFSQSQK EKMFQFPERV GWKMQKRDDE MVQEFCNEVG VDRNVLKVWM  180
HNNKNTLAKR DLNGNSGGES AAHVATANGS SSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-231291861875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084702.12e-76zinc-finger homeodomain protein 9
SwissprotQ9LXG02e-46ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A1U7ZYG61e-67A0A1U7ZYG6_NELNU; zinc-finger homeodomain protein 9
STRINGXP_010257380.12e-68(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51662549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.12e-41homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]