PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_8072_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bZIP

Protein Properties

Length: 596aa MW: 69141.8 Da PI: 9.2501

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_8072_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	25.6	2.7e-08	53	73	5	25
CHHHCHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKk 25 k err+++NReAAr+sR+RKk Neem_8072_f_3 53 KTERRLAQNREAARKSRLRKK 73 89******************8 PP
2	bZIP_1	22.6	2.2e-07	92	109	8	25
HCHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKk 25 r+++NReAAr+sR+RKk Neem_8072_f_3 92 LRLAQNREAARKSRLRKK 109 599**************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.2E-5	48	74	No hit	No description
PROSITE pattern	PS00036	0	56	71	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.7E-5	93	145	No hit	No description
PROSITE pattern	PS00036	0	93	107	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.3E-29	189	264	IPR025422	Transcription factor TGA like domain
PROSITE profile	PS50076	15.778	404	478	IPR001623	DnaJ domain
PRINTS	PR00625	2.4E-10	409	427	IPR001623	DnaJ domain
SMART	SM00271	9.9E-10	413	470	IPR001623	DnaJ domain
CDD	cd06257	1.05E-11	413	467	IPR001623	DnaJ domain
Pfam	PF00226	6.3E-16	414	475	IPR001623	DnaJ domain
SuperFamily	SSF46565	1.01E-17	414	476	IPR001623	DnaJ domain
Gene3D	G3DSA:1.10.287.110	5.5E-17	415	477	IPR001623	DnaJ domain
PRINTS	PR00625	2.4E-10	427	442	IPR001623	DnaJ domain
PRINTS	PR00625	2.4E-10	450	470	IPR001623	DnaJ domain
PROSITE pattern	PS00636	0	455	474	IPR018253	DnaJ domain, conserved site
PRINTS	PR00625	2.4E-10	496	515	IPR001623	DnaJ domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 596 aa Download sequence Send to blast
MSSTSTELAA LRRMSIFEPY PPISMWGDAF QGDASPNTDS STIVQVDARL DNKTERRLAQ 60 NREAARKSRL RKKVLGDAFI LLFLWMEGTH YLRLAQNREA ARKSRLRKKV LGDAFILLFY 120 GWKAYVQQLE SSRLKLAQLE QELERTRHQG LYIGIASDGS HYGLSAHINP GITAFEMEYG 180 HWVEEQNRQI CELRNALQAH ITDIELRILV ESGLNHYYNL FRMKADAAKA DVFYLISGMW 240 RTSTERFFQW IGGFRPSELL NILMPQIEPL TDQQVVDVCN LRQSSQQAED ALSQGIDKLQ 300 QTLVQSLTED QLISGSYHSQ MAAAVEKLDA LESFVNQADH LRQQTMQQMY RILTTRQAAR 360 ALLALGEYFH RLRALIVLPM TCRSYKYQNT VMSFDSLMVE LVGNYRTRNG QNELGRDADE 420 EQIKVAYRRL AKFYHPDVYD GRGTLEEGET AEARFIKIQA AYELLIDEER RRQYDKDNRV 480 NPMKASQAWM QWLIKKRKAF DQRGDMAIAA WAEQQQLELN LRARRLSHSK VDPEEERRIL 540 AREKKASKEY FNNTLKRHTL VLKKRDLMRK KAEEKKRAIS QLLAAEGLEL DTDDEA

Sequence ? help Back to Top

Protein Sequence Length: 596 aa Download sequence Send to blast

MSSTSTELAA LRRMSIFEPY PPISMWGDAF QGDASPNTDS STIVQVDARL DNKTERRLAQ  60
NREAARKSRL RKKVLGDAFI LLFLWMEGTH YLRLAQNREA ARKSRLRKKV LGDAFILLFY  120
GWKAYVQQLE SSRLKLAQLE QELERTRHQG LYIGIASDGS HYGLSAHINP GITAFEMEYG  180
HWVEEQNRQI CELRNALQAH ITDIELRILV ESGLNHYYNL FRMKADAAKA DVFYLISGMW  240
RTSTERFFQW IGGFRPSELL NILMPQIEPL TDQQVVDVCN LRQSSQQAED ALSQGIDKLQ  300
QTLVQSLTED QLISGSYHSQ MAAAVEKLDA LESFVNQADH LRQQTMQQMY RILTTRQAAR  360
ALLALGEYFH RLRALIVLPM TCRSYKYQNT VMSFDSLMVE LVGNYRTRNG QNELGRDADE  420
EQIKVAYRRL AKFYHPDVYD GRGTLEEGET AEARFIKIQA AYELLIDEER RRQYDKDNRV  480
NPMKASQAWM QWLIKKRKAF DQRGDMAIAA WAEQQQLELN LRARRLSHSK VDPEEERRIL  540
AREKKASKEY FNNTLKRHTL VLKKRDLMRK KAEEKKRAIS QLLAAEGLEL DTDDEA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00247	DAP	Transfer from AT1G77920	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015384214.1	0.0	transcription factor TGA7 isoform X2
Swissprot	Q93ZE2	1e-147	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A371FDF4	0.0	A0A371FDF4_MUCPR; Transcription factor TGA3 (Fragment)
STRING	XP_006434079.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3061	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-139	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]