PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_8102_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 120aa    MW: 13572.5 Da    PI: 10.8327
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_8102_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-183080255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   +y+GVr+++ +g+++AeIrdp +  k  r++lg+f+++ +Aaka++ a+ +++g
  Neem_8102_f_3 30 HYRGVRRRP-WGKYAAEIRDPAK--KGSRVWLGTFDSEVDAAKAYDCAAFRMRG 80
                   8********.**********954..34**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.1E-322989IPR001471AP2/ERF domain
CDDcd000182.14E-272988No hitNo description
PROSITE profilePS5103224.3423088IPR001471AP2/ERF domain
PfamPF008471.7E-123080IPR001471AP2/ERF domain
SMARTSM003807.3E-363094IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-233090IPR016177DNA-binding domain
PRINTSPR003671.8E-133142IPR001471AP2/ERF domain
PRINTSPR003671.8E-137090IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MQLILGSSSW SKSPEARAEQ KVADSEEKKH YRGVRRRPWG KYAAEIRDPA KKGSRVWLGT  60
FDSEVDAAKA YDCAAFRMRG RKAILNFPLE AGTPCPPANI SRKRRRNNTL ELQNSTIPII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-302989464ATERF1
3gcc_A3e-302989464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101105RKRRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421533.12e-62ethylene-responsive transcription factor ERF107
SwissprotQ9LY059e-42EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLA0A2H5Q6K24e-61A0A2H5Q6K2_CITUN; Uncharacterized protein
TrEMBLV4RKU44e-61V4RKU4_9ROSI; Uncharacterized protein
STRINGXP_006421533.17e-62(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.12e-43ERF family protein
Publications ? help Back to Top
  1. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]