PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_8195_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 357aa MW: 39201 Da PI: 10.723

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_8195_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.4	2.3e-12	61	108	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+h+e+ErrRR riN ++ Lr++lP++ K++Ka++L ++++ ++ Lq Neem_8195_f_2 61 RKHSEAERRRRLRINGQYAALRSILPNL-----LKMDKASVLGETIKTVRGLQ 108 57***********************6.....5***********999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.678	58	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.1E-10	61	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.85E-8	61	112	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.2E-13	62	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.09E-13	62	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-11	64	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	2.8E-4	147	195	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MVSLQQLEQG VKRPIHGYYN SVTCSRKISF TQGAISSNTI DYKSLISKSI SKAEAKELAA 60 RKHSEAERRR RLRINGQYAA LRSILPNLLK MDKASVLGET IKTVRGLQKT VKELKEVCRV 120 GEECVFPSEA DELNLQCPNG NEGLLKATLS CEEKQGLMSE LTRALRSVKG RVVRAEVVIV 180 GGRTKCVLWV QGFKGNEGKF MLKRALNLVI DRPVTSGNSN NLRVDRNIIW KSNSLYYKAL 240 SLSSFQMSMA ARHLLQAPTT PLPTILTMPK VTLPPLPSIQ TLPKPTIPLL NTPLPTQPTL 300 PNPTLPPLPS TQIPSLPTFP TAPKVTLPPL PSTPLPTIPN TIPSFPTIPF PSPPPSK

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MVSLQQLEQG VKRPIHGYYN SVTCSRKISF TQGAISSNTI DYKSLISKSI SKAEAKELAA  60
RKHSEAERRR RLRINGQYAA LRSILPNLLK MDKASVLGET IKTVRGLQKT VKELKEVCRV  120
GEECVFPSEA DELNLQCPNG NEGLLKATLS CEEKQGLMSE LTRALRSVKG RVVRAEVVIV  180
GGRTKCVLWV QGFKGNEGKF MLKRALNLVI DRPVTSGNSN NLRVDRNIIW KSNSLYYKAL  240
SLSSFQMSMA ARHLLQAPTT PLPTILTMPK VTLPPLPSIQ TLPKPTIPLL NTPLPTQPTL  300
PNPTLPPLPS TQIPSLPTFP TAPKVTLPPL PSTPLPTIPN TIPSFPTIPF PSPPPSK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015388414.1	1e-105	transcription factor bHLH131
TrEMBL	A0A067FBL5	1e-105	A0A067FBL5_CITSI; Uncharacterized protein
STRING	XP_006466570.1	6e-99	(Citrus sinensis)
STRING	XP_006426282.1	1e-102	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13939	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38070.1	3e-49	bHLH family protein