PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_820_f_5
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 654aa    MW: 72840 Da    PI: 7.1345
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_820_f_5genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS384.71e-1171754901318
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                   l+e+L++cA+a++++d+  a++l+++l++++s +g+p+qRl ay++e+L arla+s+s++ykal+++e +   s e l++++ ++e++P++kf+++ 
  Neem_820_f_5 175 LKEVLFTCAKAIENNDMFTADWLMTELRQMVSVSGEPIQRLGAYMMEGLVARLASSGSSIYKALRCKEPE---SGELLSYMHKLYEICPYFKFGYMS 268
                   5789*****************************************************************9...999********************* PP

          GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                   aN aI ea++ e+rvHiiDf+i qG+QW+ L+ aLasRp+gpp++RiTg+++++s   +   le +g rL+++Ae+++vpfef++ +a + ++++le
  Neem_820_f_5 269 ANGAIAEAMKDESRVHIIDFQIAQGGQWVILIMALASRPGGPPHVRITGIDDSTSAyaRGGGLEIVGLRLSRLAESFKVPFEFHA-AAISGSEVQLE 364
                   ****************************************************998899999************************.8999******* PP

          GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                   +L v+pgEa+aVn++++lh+++desvs++++rd++L+lvk+lsPkvv++veqea++n+++F +rf+e++++y a+f+s+++ lpre+++ri+vE+++
  Neem_820_f_5 365 NLGVRPGEAIAVNFAMMLHHMPDESVSIHNHRDRLLRLVKGLSPKVVTLVEQEANTNTAPFIHRFFETMNHYGAIFESIDVALPREHKDRISVEQHC 461
                   ************************************************************************************************* PP

          GRAS 290 lgreivnvvacegaerrerhetlekWrer 318
                   l+reivn+vacegaer+erhe ++kWr+ 
  Neem_820_f_5 462 LAREIVNIVACEGAERVERHELFGKWRSH 490
                   ***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.429149526IPR005202Transcription factor GRAS
PfamPF035143.6E-115175490IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MEASQSHKIS DGIQKLYDQP VQNLVSYSWP PLKNIDHPLC SDESSEGAHV SAEAFEQYCT  60
LESSSGSGGC PTVNSPSTAS FSPKKNPVSW PNYQLYPSEL QRSPDNTCGS PVSGSCLTEN  120
ENDLRHKLRE LETAMRGTSS DNVDIYNITS PTGNQVSLES EKWKYIVEIL SRGDLKEVLF  180
TCAKAIENND MFTADWLMTE LRQMVSVSGE PIQRLGAYMM EGLVARLASS GSSIYKALRC  240
KEPESGELLS YMHKLYEICP YFKFGYMSAN GAIAEAMKDE SRVHIIDFQI AQGGQWVILI  300
MALASRPGGP PHVRITGIDD STSAYARGGG LEIVGLRLSR LAESFKVPFE FHAAAISGSE  360
VQLENLGVRP GEAIAVNFAM MLHHMPDESV SIHNHRDRLL RLVKGLSPKV VTLVEQEANT  420
NTAPFIHRFF ETMNHYGAIF ESIDVALPRE HKDRISVEQH CLAREIVNIV ACEGAERVER  480
HELFGKWRSH CRLTNQLVFP KRRSKSRIMS IIPASGTVWR TYWHLASELS FKDCSITLVV  540
KTMTNWRIAA HGFLAVKYSE LECCRALLNE SHSSAPSTIL ATSPAIILQT IAALSDIHVS  600
RQSYCKRIPH SSIQQSHSSS CALYVKIRLK YSVYSTEGIS ANLRDALTFR IHCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-5118248825320Protein SCARECROW
5b3h_D3e-5118248825320Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006474942.10.0scarecrow-like transcription factor PAT1 isoform X1
RefseqXP_015384708.10.0scarecrow-like transcription factor PAT1 isoform X1
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A2H5PR670.0A0A2H5PR67_CITUN; Uncharacterized protein
STRINGXP_006474942.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]