PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_833_f_7

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 136aa MW: 16138.5 Da PI: 8.4917

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_833_f_7	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	35.2	3.9e-11	12	46	56	90
FAR1 56 aetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + tr gC a+l++ +++ +kw+vtk+ +eHnHel+ Neem_833_f_7 12 PITREGCPAMLRLALRDGDKWVVTKFIKEHNHELM 46 579******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-8	12	46	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MYRKDRVLPP PPITREGCPA MLRLALRDGD KWVVTKFIKE HNHELMSPSK VPWRGSAKNL 60 ISEDEKDRRI RELTIELNNE RQRCKRKCAA YQEQLHMVLK FVEEHTDHLS GRVQDIVKNI 120 RELEDGQLED SDFRYA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	85	RQRCKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006447973.1	2e-84	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_006447974.1	2e-84	protein FAR1-RELATED SEQUENCE 5 isoform X2
Refseq	XP_006492213.1	2e-84	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_024948794.1	2e-84	protein FAR1-RELATED SEQUENCE 5-like isoform X2
Refseq	XP_024948795.1	2e-84	protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	A0A2H5PH10	4e-83	A0A2H5PH10_CITUN; Uncharacterized protein
TrEMBL	A0A2H5PH16	2e-82	A0A2H5PH16_CITUN; Uncharacterized protein
TrEMBL	V4UAQ9	4e-83	V4UAQ9_9ROSI; Uncharacterized protein
TrEMBL	V4W590	4e-83	V4W590_9ROSI; Uncharacterized protein
STRING	XP_006492213.1	6e-84	(Citrus sinensis)
STRING	XP_006447973.1	6e-84	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16529	7	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	6e-30	FAR1 family protein