PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_8408_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 782aa    MW: 86535.8 Da    PI: 4.8545
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_8408_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.3e-08719774147
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                      + +WT+ E+e ++++v+++ +       Wk+I ++      kgRt  ++k++w++ 
    Neem_8408_f_1 719 KVPWTAKEEEMIKKGVQKFASAdgrniPWKKILEYGSsvflKGRTTIDLKDKWRNM 774
                      579*****************99*************99*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.32E-10429481IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.107.2E-9431481IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.573432481IPR019787Zinc finger, PHD-finger
SMARTSM002492.4E-6434479IPR001965Zinc finger, PHD-type
PROSITE patternPS013590435478IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500907.375714775IPR017877Myb-like domain
SuperFamilySSF466894.91E-10716776IPR009057Homeodomain-like
SMARTSM007172.9E-5718777IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-11718776IPR009057Homeodomain-like
CDDcd116602.86E-13720776No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MDILGDFSSG GSSLPWLWII EYLASLKEVD TSVLHDLIEM APELSDDLAK STREMVALRC  60
LEDLFSPGDK VNDDDLSATD KKVGFALSES CEDVLQHILQ ETLASDLKMA GPELLKWDVH  120
PFIMHKRASM PKCALQQLKD TILEGTHPLA ASLKVSSGLM SVNECDRAGH LDHNAQAMSE  180
KENLVPSTCE KMDGLSRDDF HNRNVLPSKR GRNDMADGEL AGHANDVQEE PDLASSAKKL  240
KPDAVSNDQL VDHCSDKEIA EYPSGRVVAV DGEGCIANQS QEEGIKESRF PEDGLDRCDD  300
LRLGQNGVLN DDQIQHNQVV DGYNTAKMPQ AEPVQNATMD KANFTEPVEN ATMDEANFTE  360
PRTSAGAPSV GDQQNDTVDQ SKGEMEHFHS EETSSENDEN NNESIDVAKH HFLSSNCSLG  420
YDTLATSSLT EQNLCVKCNK DGQLLVCSTS SCPLVVHENC LGCPVKFDES GNFHCPFCAY  480
SLAISDFLAA KKKASVARKE LAAFIGFKGH PKDHADGLDR KDSNHSRSNG YKDSHENEHM  540
GGRVNNQEYQ NGQHLRNVNN HVCEKVGSKE QSQPSASGAN AISPSREETN VFSGRVFVSN  600
GEKVMREKMV KECPSERGLD GDQDQAPPDS KSNSNKQTRT HIDYASEDHT DANGEVQEED  660
LQQASGDPSE KPVFALHIDG EETSEGENDK FIISNYQIRF RKRETHYTYP AIPQLRRKKV  720
PWTAKEEEMI KKGVQKFASA DGRNIPWKKI LEYGSSVFLK GRTTIDLKDK WRNMCKGSPR  780
SK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1700718RKRETHYTYPAIPQLRRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006493906.10.0uncharacterized protein LOC102627827 isoform X1
TrEMBLV4S7920.0V4S792_9ROSI; Uncharacterized protein
STRINGXP_006493906.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1434755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.24e-07MYB_related family protein