PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_842_f_6
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Dof
Protein Properties Length: 222aa    MW: 23419 Da    PI: 6.0811
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_842_f_6genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof857.2e-272668345
        zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGa 45
                  +++l+cprCdst tkfCyynny+lsqPr+fCk+CrryWt+G a
  Neem_842_f_6 26 TESLPCPRCDSTSTKFCYYNNYNLSQPRHFCKSCRRYWTQGVA 68
                  57899***********************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-162766IPR003851Zinc finger, Dof-type
PfamPF027011.3E-222866IPR003851Zinc finger, Dof-type
PROSITE profilePS5088422.5172983IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MPSDATDRKL TRSQNLMSTH PPPKITESLP CPRCDSTSTK FCYYNNYNLS QPRHFCKSCR  60
RYWTQGVAAT ANSSSCSSTM TYEHVPVSAN AVSVMPCGNP EMVSVITTDM NLNESVPGSG  120
SFTNMLNMQV QGQNFLGLGG FHGYGIGSGF EELELGFGGT RSWEISGAGY GGGNAVGAGS  180
SGCNTWQMIN GDDQGGNGGG LVGEDCYTWS GLAISTPGKG LK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00189DAPTransfer from AT1G47655Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4345469e-37AM434546.2 Vitis vinifera contig VV78X101338.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434874.11e-107dof zinc finger protein DOF1.6
TrEMBLV4V7M11e-106V4V7M1_9ROSI; Uncharacterized protein
STRINGXP_006434874.11e-106(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47655.12e-28Dof family protein