PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_8476_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 60aa    MW: 7059.09 Da    PI: 3.9798
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_8476_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.66.7e-12954350
            NAM  3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkk 50
                   +GfrF+Ptdee++   Lk k  + ++++ ++ike++ y+++Pw+Lp++
  Neem_8476_f_1  9 VGFRFKPTDEEII-LLLKMKGLDPDFSV-QTIKEIEFYNFDPWELPSR 54
                   7************.66777777777888.77**************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.205760IPR003441NAC domain
SuperFamilySSF1019415.89E-12757IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 60 aa     Download sequence    Send to blast
MEMETDSLVG FRFKPTDEEI ILLLKMKGLD PDFSVQTIKE IEFYNFDPWE LPSRIFGDSV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006465074.13e-20NAC domain-containing protein 60-like
RefseqXP_015382149.11e-20NAC domain-containing protein 40-like, partial
RefseqXP_024038729.13e-20NAC domain-containing protein 60-like
TrEMBLA0A1S8AC397e-20A0A1S8AC39_CITLI; NAC domain containing protein (Fragment)
STRINGXP_006465074.11e-19(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13336429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.16e-13NAC domain containing protein 3