PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_848_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 222aa    MW: 25626.6 Da    PI: 7.5979
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_848_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.9e-123477755
                  HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   +ErrRR+++ +++ +Lr+l+P       + ++Ka+i+e A+ YI +Lq
  Neem_848_f_3 34 DAERRRRQKLSDRLLTLRSLVPII-----TNMNKATIVEDAITYIEKLQ 77
                  68*********************6.....58*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-152492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.7042776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-142895IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-92981No hitNo description
PfamPF000103.5E-93277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-123382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MEYLGSASAE AFIAQPRRRR VYDENREFKS KNLDAERRRR QKLSDRLLTL RSLVPIITNM  60
NKATIVEDAI TYIEKLQSTV KALSDKLLEL ESSLELEEAG MPRIHEIDAA EEMKKHGIEE  120
DVEVTNIDES KLWIRIIFEN KRGRITKFLE AMASHGFELS DTNVTTSKGA TLISSCVKGV  180
YSYKLEVEQM RELLQEIIRA MQSRLLVKKL IFLSLKYLEN VS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11739RRRVYDENREFKSKNLDAERRRR
21741RRRVYDENREFKSKNLDAERRRRQK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024046743.11e-104transcription factor DYT1
TrEMBLA0A067GJZ31e-100A0A067GJZ3_CITSI; Uncharacterized protein
STRINGXP_006468225.11e-100(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83582538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.12e-46bHLH family protein