PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_8501_f_5
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NF-YA
Protein Properties Length: 328aa    MW: 36615.3 Da    PI: 10.7483
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_8501_f_5genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.63.6e-32186242158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    dep+YVNaKQy++Il+RRq Rakle+++kl +k+rkpylheSRh hA++R+RgsgGrF
  Neem_8501_f_5 186 DEPIYVNAKQYRAILRRRQYRAKLEAQNKL-IKGRKPYLHESRHVHAMNRARGSGGRF 242
                    79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.4E-37184245IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.216185245IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.9E-27187242IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.9E-23188210IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860190210IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.9E-23219242IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MLNLGNKDSG VSSAHSTSMY DVSGPSWGSS TESCVQQSSM SGSLSLKTGV APRHFLGNKQ  60
LSFQFQDQES SSTQSTGQSC SKEASMKGSN PNGQSIISAS GFNRTHMKPA GSHAKVASSI  120
GPQEFVFTPS HVDYNQSVAS LQLHYAEPCF SGLLANFYGP QAMIHNSQMM GMAPTRVPLP  180
LDFTEDEPIY VNAKQYRAIL RRRQYRAKLE AQNKLIKGRK PYLHESRHVH AMNRARGSGG  240
RFLNTKKLQE SKASPASNGD LSGSADLHFR TKHARIQSSA RKLQRCYINH FLFRHHEYLQ  300
QRRHLPAVRV WFLWLPFAHG QKHARLRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-20186247263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426612.11e-120nuclear transcription factor Y subunit A-3 isoform X2
SwissprotQ93ZH29e-60NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLV4SGY01e-119V4SGY0_9ROSI; Uncharacterized protein
STRINGXP_006426613.11e-118(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33492762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.18e-55nuclear factor Y, subunit A3