PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_8508_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 764aa    MW: 82227.8 Da    PI: 6.4223
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_8508_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.5e-16476522455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Neem_8508_f_1 476 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 522
                    6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.81E-17468526No hitNo description
SuperFamilySSF474591.83E-20469532IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-20469530IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349472521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-13476522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17478527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MPLFELYRMT KEKLDSAKQN NSSPSNDPSF QPENDFVELV WENGPILMQG QSSKARKSPT  60
SNNLSSQCVP SHTTKTRDKD VGNGTKVGKF GTVDSVLNEI PMSVPSGEMG LNQDDEMLRW  120
LNYSVDESLE HEYCSDFLPE LSGITGNELS SQNNFSSFDK RSSSSNQFGK EFKTVCVHND  180
LSLEQGNLSK ISSVGGGDGT RPKGSASQLY TSSSQQYQTS FPYFRSRVSD STGSSVKNSA  240
ENAMAGGSNP VSGGSLSGVK IQKQDQRISS NKSGFMNFSH FTRPVALAKA NLQNLGSMSG  300
SGLSRIERMG SKDKSSVASS SNPVDPTPIH SSVGLRKEVS SQCQPVAGPS KVDIKPLDVK  360
LPELAAAAEQ PEVRCQEDVC NNDKRPSQNL GESATKELLD SEKTVEPVVA SSSVCSGNSV  420
EPASDDHPTH NLKRKHRDNE DSECPSEDVE EESVVVKKAV PTRVGSGSKR SRAAEVHNLS  480
ERRRRDRINE KMRALQELIP NCNKVDKASM LDEAIEYLKT LQLQVQIMSM GAGLYVPPMM  540
FQPGMQHMHP AAHMAPYSPM GMGMGMGIGF GMGMPDMNGS SSCYPMFQVP PLHGAHFPSP  600
SVSGPAVMQA MAGSNFPLFG LHGQGHPMSM PHTPLTALSG GPMMKSAMGL NACGMVGPMD  660
NFDAATASTS KDQVQNPNLQ VMPKTGASSS VNPTSGQVSK FIMQSHFRKV VDSSGEWECQ  720
TTNEGFAQPT GVQENCQAAA VNGRGTFNSS SKNDDESNRQ ACYD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1480485ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423962.10.0transcription factor PIF3
RefseqXP_006480339.10.0transcription factor PIF3
TrEMBLV4SJJ60.0V4SJJ6_9ROSI; Uncharacterized protein
STRINGXP_006480339.10.0(Citrus sinensis)
STRINGXP_006423961.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76652739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-50phytochrome interacting factor 3