PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_8604_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 196aa MW: 21587.8 Da PI: 6.3576

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_8604_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00036	28	50	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C++ Fs+ L H++ H Neem_8604_f_1 28 YDCTFCKRGFSNAQALGGHMNIH 50 88*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.0E-4	26	54	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.74E-6	26	54	No hit	No description
PROSITE profile	PS50157	11.344	28	55	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	30	50	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MEADQPSQEN SDQHGTSDDQ AASPIRSYDC TFCKRGFSNA QALGGHMNIH RKDKAELKQA 60 AAAATSNKSN QPPFDIWKIR ASYSPISTNR IRQSMEVKGT AQEISATQWR PWIPGEENDA 120 TESDKIFQLG PVRQLPLFVE RPFRIHQNPV PGTQVHAGGA EKDLSSSSSE SGLDLELRLG 180 LDPQESTSST GTKKFF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015388797.1	4e-63	transcriptional regulator TAC1
TrEMBL	A0A067FTW8	1e-61	A0A067FTW8_CITSI; Uncharacterized protein
TrEMBL	A0A2H5NCW4	1e-61	A0A2H5NCW4_CITUN; Uncharacterized protein
STRING	XP_006424902.1	9e-62	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6991	23	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	1e-15	C2H2 family protein