PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_8611_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 229aa MW: 26156.4 Da PI: 7.0197

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_8611_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.2	1.7e-20	63	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+e+Ak++G s+r++ ++ + + t+r fvC + g++ ++++++k +r+r+++r+gC+a ++++k + +w+vt + ++HnHel Neem_8611_f_1 63 EFYSEFAKRCGLSIRRHGTEGKdGVGKGLTRRYFVCHRAGNTPIKSSNENKPQRNRKSSRCGCQAYMRISKITelgAPEWRVTGFANNHNHELL 156 6***********9987766636677799**************9******************99887889***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.6E-17	63	156	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MMSDDAAQML MVYDDPSDQR SLSLDDTSST EESPDETRLS LDTSNDVVPY IGQRFPTHDA 60 AYEFYSEFAK RCGLSIRRHG TEGKDGVGKG LTRRYFVCHR AGNTPIKSSN ENKPQRNRKS 120 SRCGCQAYMR ISKITELGAP EWRVTGFANN HNHELLEPNR GRFLPAYRTI SETDKSRILM 180 FAKTGISVQQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSI RKLDPEDES

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006431499.1	1e-160	protein FAR1-RELATED SEQUENCE 11 isoform X2
Refseq	XP_006470984.1	1e-160	protein FAR1-RELATED SEQUENCE 11 isoform X2
Refseq	XP_006470985.1	1e-160	protein FAR1-RELATED SEQUENCE 11 isoform X2
Refseq	XP_015383462.1	1e-160	protein FAR1-RELATED SEQUENCE 11 isoform X2
Refseq	XP_015383463.1	1e-160	protein FAR1-RELATED SEQUENCE 11 isoform X2
Refseq	XP_024039994.1	1e-160	protein FAR1-RELATED SEQUENCE 11 isoform X2
Refseq	XP_024039995.1	1e-160	protein FAR1-RELATED SEQUENCE 11 isoform X2
Refseq	XP_024039996.1	1e-160	protein FAR1-RELATED SEQUENCE 11 isoform X2
Refseq	XP_024952120.1	1e-160	protein FAR1-RELATED SEQUENCE 11 isoform X2
Swissprot	Q9SY66	1e-138	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	V4UZ79	1e-159	V4UZ79_9ROSI; Uncharacterized protein
STRING	XP_006470980.1	1e-159	(Citrus sinensis)
STRING	XP_006431498.1	1e-159	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	1e-141	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]