PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_8642_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 109aa    MW: 12684 Da    PI: 4.4887
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_8642_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.88.9e-121848131
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartm 31
                     rg+WT+eEd +l+++++ +G ++WktIa + 
    Neem_8642_f_1 18 RGAWTPEEDRRLAECIEVHGAKRWKTIAIKS 48
                     89*************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-101152IPR009057Homeodomain-like
SuperFamilySSF466894.52E-81247IPR009057Homeodomain-like
PROSITE profilePS5129412.1831363IPR017930Myb domain
SMARTSM007170.00991776IPR001005SANT/Myb domain
PfamPF002492.6E-91846IPR001005SANT/Myb domain
CDDcd001679.43E-62045No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MAPKDINQYA SAKKAINRGA WTPEEDRRLA ECIEVHGAKR WKTIAIKSET IPEKTSDVNH  60
MKEQAVKDFE NSELNFDFST EESYGLNLDW ADKFLQLDDN FWLTEEEKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9T9W42e-23B9T9W4_RICCO; Uncharacterized protein
STRINGXP_002535033.13e-24(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.14e-07myb domain protein 118