PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_8710_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

WOX

Protein Properties

Length: 216aa MW: 24122.7 Da PI: 4.678

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_8710_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.9	4.5e-10	90	126	2	37
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl 37 r+R+t+t+ ql++Le+ F + n +ps+++++e++++l Neem_8710_f_1 90 RQRWTPTPVQLQILESIFDQgNGTPSKQKIKEITTEL 126 89***************99***********998 PP
2	Wus_type_Homeobox	48	3.1e-16	89	126	2	39
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeL 39 ar+RWtPtp Q++iLe+++++G tP+k++i++it+eL Neem_8710_f_1 89 ARQRWTPTPVQLQILESIFDQGNGTPSKQKIKEITTEL 126 789*********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.6E-6	85	127	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.89E-5	89	126	IPR009057	Homeodomain-like
Pfam	PF00046	7.0E-8	90	126	IPR001356	Homeobox domain
CDD	cd00086	6.44E-4	90	126	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MEWENRESQE NQNQRGENGG NVNGVMYVKV MTDEQLETLR KQIAVYATIC EQLVEMHKSL 60 SAQQDLAGGR LGNIYCDPLM TSAGHKITAR QRWTPTPVQL QILESIFDQG NGTPSKQKIK 120 EITTELIGSS NNGESEVETE VDSLHEKKTK PENFSSQQNA APRLADDLCF HSPEITSELH 180 FLGVFSNPRD DHLTGKTGMS GSYNLYEHAE DYSMAG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KU947671	5e-43	KU947671.1 Toxicodendron vernicifluum microsatellite c23665 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021674924.1	1e-112	WUSCHEL-related homeobox 13
Swissprot	O81788	5e-86	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A0D2M0X0	1e-110	A0A0D2M0X0_GOSRA; Uncharacterized protein
STRING	Gorai.001G199200.1	1e-111	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4620	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	9e-86	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]