PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_877_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

HD-ZIP

Protein Properties

Length: 142aa MW: 15982.7 Da PI: 5.8055

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_877_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.2	3.3e-19	80	132	2	54
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 rk+ +++keq + Lee F++n++++ +++e LA++l+L rqV vWFqNrRa+ Neem_877_f_2 80 RKKLRLSKEQSRLLEESFRQNHTLNPKQKEALATQLKLRPRQVEVWFQNRRAR 132 788899**********************************************9 PP
2	HD-ZIP_I/II	80.3	3e-26	80	133	1	54
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt 54 +kk+rlskeq++lLEesF+++++L+p++K++la++L+l+prqv+vWFqnrRAR Neem_877_f_2 80 RKKLRLSKEQSRLLEESFRQNHTLNPKQKEALATQLKLRPRQVEVWFQNRRARS 133 69***************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-18	64	132	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.56E-19	65	132	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.374	76	136	IPR001356	Homeobox domain
SMART	SM00389	4.9E-14	78	140	IPR001356	Homeobox domain
CDD	cd00086	6.27E-16	79	133	No hit	No description
Pfam	PF00046	1.9E-16	80	132	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MAVLPRSSSS LELTISVPGF SSSPSLPASS GDQQNQLAAF TMKDLDINQI PTGEGGEEEY 60 WNATGSMEDE EESSNGGPPR KKLRLSKEQS RLLEESFRQN HTLNPKQKEA LATQLKLRPR 120 QVEVWFQNRR ARSFHYFVGG WD

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010657445.1	7e-62	PREDICTED: homeobox-leucine zipper protein HOX3 isoform X1
Refseq	XP_019076308.1	1e-62	PREDICTED: homeobox-leucine zipper protein HOX3 isoform X2
Swissprot	Q8S9N6	6e-45	ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBL	A0A1Q3BH86	9e-62	A0A1Q3BH86_CEPFO; Homeobox domain-containing protein/HALZ domain-containing protein
STRING	VIT_01s0011g04870.t01	3e-61	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4890	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	1e-43	homeobox-leucine zipper protein 17

Publications ? help Back to Top
Zhao P, et al. ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress. Sci Rep, 2017. 7: p. 45492 [PMID:28358040]