PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_8900_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 258aa MW: 28524.9 Da PI: 9.3561

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_8900_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.2e-05	85	105	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k Fs++ L H++ H Neem_8900_f_1 85 CKYCSKKFSNSQALGGHQNAH 105 ******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.1E-6	70	109	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.36E-7	79	110	No hit	No description
PROSITE profile	PS50157	11.926	83	110	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	85	105	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MKKFEDKKMK GKVGEEEEAI SELHNCSLDL RLSNIVNEFD NQKSNPELNL LDSLDADLSK 60 GSESSEQKIM RSHANKAVGK KLFLCKYCSK KFSNSQALGG HQNAHKKERA ALRKDKNNNN 120 NNLVSFDQVS GPLIYPQPIT GSFDGSLGVQ VHSMIHKPYN YYHPLVHVIN RPQFPMHRNT 180 SADYWVPNGG FQVQPVGNMG FNRTVAPCGT FQSAFQPNSE AAATSKTPFP GQGSFWRGGF 240 SGNNQHGESA GPNLSLNL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	V4T2K6	1e-65	V4T2K6_9ROSI; Uncharacterized protein
STRING	XP_006430491.1	2e-66	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM21300	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	8e-15	C2H2 family protein