PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_8931_f_4
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family CAMTA
Protein Properties Length: 1078aa    MW: 120017 Da    PI: 7.9047
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_8931_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1175.76.3e-55201363118
           CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 
                    +e + rwl+++ei++iL n++k++lt +++ rp+ gsl+L++rk +ryfrkDG+ w+kkkdgktv+E+hekLK g+++vl+cyYah+e+n++fqrr
  Neem_8931_f_4  20 QEaQYRWLRPTEICEILRNYQKFHLTPDPPVRPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEDNENFQRR 115
                    55599******************************************************************************************* PP

           CG-1  98 cywlLeeelekivlvhylevk 118
                    +yw+L+ +le+ivlvhy+evk
  Neem_8931_f_4 116 SYWMLDGQLEHIVLVHYREVK 136
                    ******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.85715141IPR005559CG-1 DNA-binding domain
SMARTSM010766.9E-7918136IPR005559CG-1 DNA-binding domain
PfamPF038594.6E-4921134IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.4E-7503593IPR013783Immunoglobulin-like fold
CDDcd001020.00413504592No hitNo description
PfamPF018337.2E-7505590IPR002909IPT domain
SuperFamilySSF812961.35E-17505590IPR014756Immunoglobulin E-set
SuperFamilySSF484036.06E-17680801IPR020683Ankyrin repeat-containing domain
CDDcd002041.40E-14695798No hitNo description
Gene3DG3DSA:1.25.40.203.2E-17697803IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.104706810IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.858739771IPR002110Ankyrin repeat
SMARTSM002480.0058739768IPR002110Ankyrin repeat
SMARTSM00248500778807IPR002110Ankyrin repeat
SuperFamilySSF525402.66E-8862964IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001515913935IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.279914943IPR000048IQ motif, EF-hand binding site
PfamPF006120.1917934IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0016936958IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.413937965IPR000048IQ motif, EF-hand binding site
PfamPF006122.2E-4940958IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1078 aa     Download sequence    Send to blast
MAQTRRYVPN QQLDLEQILQ EAQYRWLRPT EICEILRNYQ KFHLTPDPPV RPPAGSLFLF  60
DRKALRYFRK DGHRWRKKKD GKTVKEAHEK LKAGSIDVLH CYYAHGEDNE NFQRRSYWML  120
DGQLEHIVLV HYREVKEGYK SGVSRLVADP GSQIESPQTS SARSLVQANS PAPTAHTSHA  180
SGLNKIDWNG QALSSEFEDV DSGNGPGAHS LAQPIYGSMP QNASLVAAGL PDLSRHPPGS  240
WFAGTKFNHG TGSSMWTQIL SSSRNAFNVL DQQQKFYIEQ PGGADFTKNK LTDARLDSNS  300
AVTNIGTSGD KLITDVDVPA VMPSSQGASQ DSSFLFSDKG LDGVRNLTRK TPNPYPLFLL  360
ELGWPGSVKC ALDHPNYAQR AIQGLNNLIN VNHHPVPLEH DFNLSNHQCQ TFSVPETTVA  420
SVAQAENQPK DELGELKKLD SFGRWMDQEI GGDCDDSLMA SDSGNYWNTL DTENDDKEVS  480
SLSHHMQLEI DSLGPSLSQE QLFSIRDFSP DWAYSGVETK VLIIGMFLGN KKLSSDTRWS  540
CMFGEIEVPA EVLTDNVIRC QAPSHAPGRV PFYITCSNRL ACSEVREFEY QEKPDKVAIS  600
MAVKSSPEEE VFFQTRLAKI LYLDPQRKQL DCAIEECDRC KLKNAIYSMS GTREKDWQQV  660
EETSMVFDDA NCRDKLIQNL LRDRLCEWLI WKIHEGGKGP HVTDDGGQGV LHLAAALGYA  720
WAISPVIAAG VSPNFRDVRG RTALHWASYF GREETVIALV KLGAAPGAVE DPTPAFPGGQ  780
TAADLASKRG HKGIAGYLAE ADLTSHLSSL TVNENGMDNI SATIAADKAI ETAAQAGARS  840
NVAVAEQLAL KGSLAAVRKS AHAAALIQQA FRARSFRHRQ STQSSDDVSE VSVDLVALGS  900
LNKVQKMSHF EDYLHFAAVR IQQKYRGWKG RKDFLKIRNR IVKLQAHVRG HQVRKQYKKV  960
VWSVSIVEKA ILRWRRRGAG LRGFRVENTT ANVASGIDKT DEYEFLRIGR KQKFAGVEKA  1020
LERVKSMVRN PEARDQYMRL VAKFENFKMY DKGNSATAAG EDTLKSTKKD NLHANVAD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4534651e-37AM453465.2 Vitis vinifera contig VV78X089070.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488760.10.0calmodulin-binding transcription activator 3-like isoform X1
RefseqXP_006488761.10.0calmodulin-binding transcription activator 3-like isoform X1
RefseqXP_024033801.10.0calmodulin-binding transcription activator 3 isoform X1
RefseqXP_024033834.10.0calmodulin-binding transcription activator 3 isoform X1
TrEMBLV4RXQ30.0V4RXQ3_9ROSI; Uncharacterized protein
STRINGXP_006488760.10.0(Citrus sinensis)
STRINGXP_006419272.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16526911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.21e-153signal responsive 1