PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_905_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family AP2
Protein Properties Length: 547aa    MW: 59390 Da    PI: 7.2314
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_905_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.15.8e-15263314155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Neem_905_f_2 263 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 314
                   57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.2E-5180230IPR016177DNA-binding domain
SMARTSM003802.3E-5181234IPR001471AP2/ERF domain
PRINTSPR003672.4E-6182193IPR001471AP2/ERF domain
PfamPF008477.2E-10263314IPR001471AP2/ERF domain
CDDcd000182.80E-25263324No hitNo description
SuperFamilySSF541717.85E-18263324IPR016177DNA-binding domain
PROSITE profilePS5103219.045264322IPR001471AP2/ERF domain
SMARTSM003801.5E-33264328IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-18264323IPR001471AP2/ERF domain
PRINTSPR003672.4E-6304324IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MNNNMSNNDL TNHMDSSWLG FSLSNNNITL QSSSSDSSHL CLIEAFTSTA TAPTSSGNVV  60
DAPREEDATA ITGATDLSIF TGSPKLEDFL GGSCATGTTA PPQQQQQQLP QFSTGTTPLT  120
ASTNTHEIYD SELKTIAASF LRGFSTEQIE TQKQQPLVPL VAAEQPTPKK SVDTFGQRTS  180
IYRGVTRHRW TGRYEAHLWD NSCRREGQSR KGRQALKYWG PTTTTNFPVS NYEKELEDMK  240
NMTRQEFVAS LRRKSSGFSR GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE  300
AAEAYDIAAI KFRGLNAVTN FDMSRYDVKS IANSNLPIGG IAGKSKNSSE SASDSKSIDG  360
SRSDDRDISS ASSLAFASHP ATSTLSFGLP IKQDPSDYWS NIFGYQNSST TINNSKNLNI  420
TTPTLFHQLS GTNGSTTFQN PPSFHMDFSA NSSVNESNNG LFNVGNYVHQ QQHSGVSTST  480
TATATTTTPA PTTSSIPFAT PIALNSTSGT NYESSSGYGN WISPTLHSFQ SAKPNLSVFQ  540
TPIFGME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024033781.10.0AP2-like ethylene-responsive transcription factor AIL5 isoform X2
SwissprotQ6PQQ31e-150AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A2H5NAD70.0A0A2H5NAD7_CITUN; Uncharacterized protein
TrEMBLV4UQK40.0V4UQK4_9ROSI; Uncharacterized protein
STRINGXP_006474192.10.0(Citrus sinensis)
STRINGXP_006453360.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115832833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-137AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]