PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_9061_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 225aa MW: 24312.4 Da PI: 4.5617

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_9061_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.5	2.3e-11	14	44	1	31
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 +g+WT+eEd++lv++++++G g+W++ ++ Neem_9061_f_1 14 KGPWTPEEDQKLVKYIQKHGHGSWRALPKLA 44 79***********************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-13	5	46	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.641	9	66	IPR017930	Myb domain
SuperFamily	SSF46689	2.23E-9	11	43	IPR009057	Homeodomain-like
SMART	SM00717	3.6E-4	13	73	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-9	14	43	IPR001005	SANT/Myb domain
CDD	cd00167	4.23E-7	16	54	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MGRSPCCDET GLKKGPWTPE EDQKLVKYIQ KHGHGSWRAL PKLAALANLK DIMETHSWDE 60 QAVKLQVEMA KLQYLQYLLQ PNSNINNNTT SLLTDIDTIN LLNSLSSSPP DNIAGGGSMD 120 SLIHLNNSLI PFSHMPDLQA SYQTTPMNNK DSTPAAQEFP VLSQLTPAAA SSATPSPPSM 180 VAPVPETSSI NNLGDACSTS SCYGGAPTSI WPELLLEDPL FHEIA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006428207.1	6e-51	transcription factor MYB93
Refseq	XP_006464255.1	6e-51	transcription factor MYB93
TrEMBL	V4SLA6	1e-49	V4SLA6_9ROSI; Uncharacterized protein
STRING	XP_006464255.1	2e-50	(Citrus sinensis)
STRING	XP_006428207.1	2e-50	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	1e-20	myb domain protein 93