PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_90_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 209aa MW: 23946.3 Da PI: 8.803

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_90_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.3	5.6e-13	55	105	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r + n +Er+RR+++++ f++L +l+P + ++ Kls e L +A+ Y k+Lq Neem_90_f_3 55 RISRNLIERNRRNHMKDLFSKLFSLVPIN---HNSKLSITELLDQATTYTKQLQ 105 7899***********************...*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.865	53	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-15	54	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-15	55	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.5E-10	55	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.08E-9	55	109	No hit	No description
SMART	SM00353	5.0E-10	59	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MDMDSPFLHR TKCVSLSSSR QLVANQFPCT IGIDEMEDDQ KKQEATTQQD NNLARISRNL 60 IERNRRNHMK DLFSKLFSLV PINHNSKLSI TELLDQATTY TKQLQAKVEK MRERQELLKV 120 DRGNFEPVIN IKYSLDCNNL EVTIISGSRK SFLLHQVIGV LEEEGAEVVS TTYQNAGNKG 180 FYTIYAKAFS SRIGIETSRV DERLKKLIS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	XP_008787951.1	1e-37	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2382	21	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10585.1	1e-26	bHLH family protein