PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_9167_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 191aa MW: 20249 Da PI: 10.601

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_9167_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.4	3.3e-08	27	62	12	47
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ + ++G+g+W++I+r + +Rt+ q+ s+ qky Neem_9167_f_3 27 FLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 62 6667889****************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.13E-10	26	68	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.2E-11	26	65	IPR006447	Myb domain, plants
CDD	cd00167	2.78E-5	26	63	No hit	No description
Pfam	PF00249	4.2E-6	27	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.4E-6	28	61	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MSTSTSYHLG EEEIWLVITH IARPWLFLLG LDKYGKGDWR SISRNFVVTR TPTQVASHAQ 60 KYFIRLNSMN KDRRRSSIHD ITSVNNGDIS APQGPITGQT NGSGAGGSTG KSSKQPQQHP 120 TGPPGVGMYG APTIGQPIGP LVSAVGTPVN LPAPAHMAYG VRAPVPGAVV PGAPMNMAPV 180 PYPMPHTSAH R

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022763892.1	1e-102	transcription factor SRM1-like
Refseq	XP_022763893.1	1e-102	transcription factor SRM1-like
Swissprot	Q9FNN6	9e-72	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A1R3I6D4	1e-103	A0A1R3I6D4_COCAP; Uncharacterized protein
STRING	Gorai.013G067600.1	1e-100	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3556	28	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	2e-55	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]