PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_923_f_8

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 414aa MW: 47592.9 Da PI: 9.1643

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_923_f_8	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.8e-05	156	179	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +Lk+H + H Neem_923_f_8 156 YVCGVCGRKCKTSLDLKKHFKQlH 179 9******************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	7.7E-6	76	146	IPR029060	PIN domain-like
SMART	SM00355	0.0099	156	179	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.699	156	184	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	158	179	IPR007087	Zinc finger, C2H2
CDD	cd06167	1.16E-10	170	310	No hit	No description
Gene3D	G3DSA:3.40.50.1010	7.7E-6	241	295	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MKSEDCNRLI QKSLPRLTNE VKDELSLQLA RLSHSKTPKS ENRPPFFQIS SSSSGHAATF 60 EIDMVRNKQG IYTQKQHNKV VVLWDLDNKP PRGPPYDAAM SLRRVAEKFG DVTDMSAYAN 120 RHAFIHLPQW VIEERRERKQ LDILERRGQV FPAHPYVCGV CGRKCKTSLD LKKHFKQLHE 180 RERQKKLNRM RSLKGKKRQK YKERYINGNE KYNETARNLL RPKIGYGLGS ELRRAGVFVR 240 TVKDKPQAAD WALKRQMQHS MSSGIDWMVL VSDDKDFKEM LRKAKEANLG TVVVGDSNGG 300 LGQHADLWVP WIGVENGELS EKDLVPRRRR SEQVERDNSD LFSVTKFDGG VGLHGESNLD 360 SVVNEPVAER TEFGGVRISV FSEGGEEEED WMIEEVGGDY LLKDEEIEEN YGYF

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MKSEDCNRLI QKSLPRLTNE VKDELSLQLA RLSHSKTPKS ENRPPFFQIS SSSSGHAATF  60
EIDMVRNKQG IYTQKQHNKV VVLWDLDNKP PRGPPYDAAM SLRRVAEKFG DVTDMSAYAN  120
RHAFIHLPQW VIEERRERKQ LDILERRGQV FPAHPYVCGV CGRKCKTSLD LKKHFKQLHE  180
RERQKKLNRM RSLKGKKRQK YKERYINGNE KYNETARNLL RPKIGYGLGS ELRRAGVFVR  240
TVKDKPQAAD WALKRQMQHS MSSGIDWMVL VSDDKDFKEM LRKAKEANLG TVVVGDSNGG  300
LGQHADLWVP WIGVENGELS EKDLVPRRRR SEQVERDNSD LFSVTKFDGG VGLHGESNLD  360
SVVNEPVAER TEFGGVRISV FSEGGEEEED WMIEEVGGDY LLKDEEIEEN YGYF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006434724.1	0.0	uncharacterized protein LOC18041158
Refseq	XP_024040192.1	0.0	uncharacterized protein LOC18041158
TrEMBL	A0A067GWV6	0.0	A0A067GWV6_CITSI; Uncharacterized protein
TrEMBL	A0A2H5NHA3	0.0	A0A2H5NHA3_CITUN; Uncharacterized protein
TrEMBL	V4V788	0.0	V4V788_9ROSI; Uncharacterized protein
STRING	XP_006434724.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12584	24	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-159	C2H2-like zinc finger protein