PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_9263_f_10

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 137aa MW: 16183.4 Da PI: 7.1113

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_9263_f_10	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.2	2e-33	6	116	3	112
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 G+rF+P+ +e+++++L +k++g+++++ + ++evdi+k+ePw+Lp ++v +++ew fF+k k a++ r+ r+tk+g Wk tg+d+++l+ Neem_9263_f_10 6 LGYRFRPSGQEIIKFFLDRKMHGDEFHV-RLVNEVDICKFEPWELPhQSVIPDDEEWCFFHKPTPKCANSGRTDRTTKAGHWKVTGNDHPILDDs 99 59************************.89***********556666999*********************************986 PP NAM 96 kgelvglkktLvfykgr 112 +++++g kktLvfy+gr Neem_9263_f_10 100 EEQEIGFKKTLVFYRGR 116 7788********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	31.083	4	137	IPR003441	NAC domain
SuperFamily	SSF101941	4.05E-35	6	117	IPR003441	NAC domain
Pfam	PF02365	9.1E-14	7	115	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MDYNYLGYRF RPSGQEIIKF FLDRKMHGDE FHVRLVNEVD ICKFEPWELP HQSVIPDDEE 60 WCFFHKPTPK CANSGRTDRT TKAGHWKVTG NDHPILDDSE EQEIGFKKTL VFYRGRGLFT 120 YSILAVLQNI LWRAACK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-22	7	117	20	127	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-22	7	117	20	127	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-22	7	117	20	127	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-22	7	117	20	127	NO APICAL MERISTEM PROTEIN
3swm_A	1e-22	7	117	23	130	NAC domain-containing protein 19
3swm_B	1e-22	7	117	23	130	NAC domain-containing protein 19
3swm_C	1e-22	7	117	23	130	NAC domain-containing protein 19
3swm_D	1e-22	7	117	23	130	NAC domain-containing protein 19
3swp_A	1e-22	7	117	23	130	NAC domain-containing protein 19
3swp_B	1e-22	7	117	23	130	NAC domain-containing protein 19
3swp_C	1e-22	7	117	23	130	NAC domain-containing protein 19
3swp_D	1e-22	7	117	23	130	NAC domain-containing protein 19
4dul_A	1e-22	7	117	20	127	NAC domain-containing protein 19
4dul_B	1e-22	7	117	20	127	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006491405.1	1e-47	protein NTM1-like 9
Refseq	XP_006491410.1	8e-48	NAC domain-containing protein 71-like
Refseq	XP_024043356.1	7e-48	NAC domain-containing protein 71-like
TrEMBL	V4TC69	2e-41	V4TC69_9ROSI; Uncharacterized protein
STRING	XP_006491405.1	4e-47	(Citrus sinensis)
STRING	XP_006491410.1	3e-47	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18606	4	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	1e-30	NAC domain containing protein 71