PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9263_f_12
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 484aa    MW: 55114 Da    PI: 6.6961
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9263_f_12genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1332.1e-4151323128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     +GfrFhPt+ee+++++L++k++g ++++ ++++ev+i+k+eP+dLp+   +  e++ wyfF     k+a++kr++r+t +g+Wk tg+d+ + +k
  Neem_9263_f_12   5 VGFRFHPTEEEIISYFLERKMRGLDFPV-HTVAEVNICKFEPSDLPQlsPLPPEDQVWYFFNAPVYKNARSKRTERTTGTGFWKVTGNDRVIRDK 98 
                     7***************************.78**************95334445899*************************************99 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++e++g k+ Lvfy+gr ++g kt+Wvmhey+ 
  Neem_9263_f_12  99 qGKEEIGFKRNLVFYSGRVRNGIKTNWVMHEYHS 132
                     67778***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100544.4253150IPR003441NAC domain
SuperFamilySSF1019412.35E-444150IPR003441NAC domain
PfamPF023651.4E-225131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MGEFVGFRFH PTEEEIISYF LERKMRGLDF PVHTVAEVNI CKFEPSDLPQ LSPLPPEDQV  60
WYFFNAPVYK NARSKRTERT TGTGFWKVTG NDRVIRDKQG KEEIGFKRNL VFYSGRVRNG  120
IKTNWVMHEY HSNNATSYQK EYVLIRLKRK SGDRSGTCND SNHHLASNTG NNVAVAPQEN  180
HVLSEELEIL LDNTGLDHNS LPALLSRIQP EQETLDPNGF GNEHNLSSSH FHTTEEDDAF  240
VDSLLAEGLC SGGRRIHNPS KSLRKVYVGD SSDTDTEHVY SKVLQSANLS DENTSSGKYQ  300
LKPMEPTFYE TSSSDGELYK AEKGFFDEIV VSDMDMPMIN CLELVVDEFP TETRACKSQH  360
NTPKSHSFIE KKCAPQELHL QNKALCQALS KVKAREAAMR ADLPKTENSI VKFAKDQKMA  420
QTSNAKTSLT FRSNKGERSN RECYFAFLET PLDHKKYPPS VYLSNVLISL ILIIFFVREI  480
MYLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-29615020165NO APICAL MERISTEM PROTEIN
1ut4_B2e-29615020165NO APICAL MERISTEM PROTEIN
1ut7_A2e-29615020165NO APICAL MERISTEM PROTEIN
1ut7_B2e-29615020165NO APICAL MERISTEM PROTEIN
3swm_A3e-29615023168NAC domain-containing protein 19
3swm_B3e-29615023168NAC domain-containing protein 19
3swm_C3e-29615023168NAC domain-containing protein 19
3swm_D3e-29615023168NAC domain-containing protein 19
3swp_A3e-29615023168NAC domain-containing protein 19
3swp_B3e-29615023168NAC domain-containing protein 19
3swp_C3e-29615023168NAC domain-containing protein 19
3swp_D3e-29615023168NAC domain-containing protein 19
4dul_A2e-29615020165NAC domain-containing protein 19
4dul_B2e-29615020165NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006491404.11e-122NAC domain-containing protein 86-like isoform X3
TrEMBLA0A1S8ADV11e-110A0A1S8ADV1_CITLI; NAC domain containing protein (Fragment)
STRINGXP_006491403.11e-120(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1798738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.17e-37NAC domain containing protein 69