PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_9308_f_11

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

SBP

Protein Properties

Length: 290aa MW: 32788.9 Da PI: 8.9785

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_9308_f_11	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.2	3.7e-41	167	244	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+q+ Neem_9308_f_11 167 RCQAEGCNADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQQ 244 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.1E-35	161	229	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.265	165	242	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.57E-38	166	245	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.4E-31	168	241	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009554	Biological Process	megasporogenesis
GO:0009556	Biological Process	microsporogenesis
GO:0048653	Biological Process	anther development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MVDYEWGNPS TIMLTGDEPN QESNQTRQIF DHYTNPNSFN DANNNTNNYF SEPAGANTTL 60 FHHQQQQHNV HSLFDPRAYN SASAYAPATH HHSMLSIDAV SAAAAGGGGG YFVIPKTEEV 120 SRPTDFASRI GLNLGGRTYF SSADDDFVNR LYRRPRPGEP GSSNIPRCQA EGCNADLTHA 180 KHYHRRHKVC EFHSKASTVI AAGLTQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR 240 KSQQQQQPAQ DNQKSHQLES ARNSPSENLA RKIEGREDAA VMRSPTWRLY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-33	158	241	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269\|PubMed:12671094, ECO:0000269\|PubMed:16095614, ECO:0000269\|PubMed:17093870}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00090	SELEX	Transfer from AT1G02065	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006445348.1	1e-137	squamosa promoter-binding-like protein 8
Refseq	XP_006464477.1	1e-137	squamosa promoter-binding-like protein 8 isoform X1
Refseq	XP_024044185.1	1e-137	squamosa promoter-binding-like protein 8
Refseq	XP_024949482.1	1e-137	squamosa promoter-binding-like protein 8 isoform X2
Swissprot	Q8GXL3	3e-87	SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBL	A0A067HCP3	1e-136	A0A067HCP3_CITSI; Uncharacterized protein
TrEMBL	A0A067HCW1	1e-135	A0A067HCW1_CITSI; Uncharacterized protein
TrEMBL	A0A2H5NP02	1e-135	A0A2H5NP02_CITUN; Uncharacterized protein
TrEMBL	V4TE21	1e-135	V4TE21_9ROSI; Squamosa promoter-binding protein 7
TrEMBL	V4TYA7	1e-135	V4TYA7_9ROSI; Uncharacterized protein
TrEMBL	V4VYP0	1e-136	V4VYP0_9ROSI; Uncharacterized protein
STRING	XP_006464477.1	1e-136	(Citrus sinensis)
STRING	XP_006445348.1	1e-136	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7010	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	1e-81	squamosa promoter binding protein-like 8

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xing S, et al. SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility. Plants (Basel), 2013. 2(3): p. 416-28 [PMID:27137384]