PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9469_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 582aa    MW: 63980.8 Da    PI: 8.5271
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9469_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.11e-15312358455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Neem_9469_f_2 312 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 358
                    6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-20306374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.044308357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.79E-16311362No hitNo description
Gene3DG3DSA:4.10.280.101.1E-20312366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-13312358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-17314363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MNHCVPDFEM DDYYSIPTSS VLTRPKKSAI ISYYRAEDDV MELLWQNGQV VLQSQNQRSF  60
KKSPPSKFDD AVIPADQSAP REIDFCADLL YPTPCVTSAT TTATAASPAR ATHIYESRPQ  120
QQQNTSTAAS RPPIPPPKRT ENFVHFCRQK PRTEVSGPSY SKNVVVREST VVDSSDTPAV  180
GPESRVSKAI TTTDGASGVN NGCGNMSGAV AAASSSAGAG GGARGLATCE MTVTSSPGGS  240
SASAEPPAQK PPVEDRKRKG RENDEECHSE QSVFNLLVLV QLEQMGVELE SIDTKKQTRG  300
STSTKRSRAA EVHNLSERRR RDRINEKMRA LQELIPRCNK SDKASMLDEA IEYLKSLQLQ  360
VQMMSMGCGM VPMMFPGVQQ YMPNMGMGIG MGMAMNMEMG MSRPMMPFPN VLAGSAVRTP  420
PAAAHLGPRF PMPAFHMPPI PDPSRVQAAN QSDPRLNSFG MQNLNQPQTT NFADPYQQYL  480
ALHQMQLPLQ QGLGLNSITF KDMIGSKDIV DLESVLSSLS WEFSVNSFCL YRVKQWSSQV  540
RTNQVPVRQL KILKITHQGH DMISLSILVA KEWKFRYSAV SV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316321ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443674.10.0transcription factor PIF1
RefseqXP_006480181.10.0transcription factor PIF1 isoform X2
TrEMBLV4VUI50.0V4VUI5_9ROSI; Uncharacterized protein
STRINGXP_006443673.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71082643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.33e-62phytochrome interacting factor 3-like 5