PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9498_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 266aa    MW: 29054.2 Da    PI: 8.2176
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9498_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.53.9e-15185245161
                    XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                    +ke kr +r+ +NR++A+  R+RKka++ eLe++vk Le++N++L ++l++l++e + l+ 
  Neem_9498_f_1 185 DKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLEKKNSELEERLSTLQNENQMLRH 245
                    5899***************************************************998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF156971.5E-10435IPR031421Protein of unknown function DUF4666
SMARTSM003386.5E-15185249IPR004827Basic-leucine zipper domain
PfamPF001706.1E-14186246IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.898187250IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.38E-13189247No hitNo description
Gene3DG3DSA:1.20.5.1701.6E-16189249No hitNo description
CDDcd147041.21E-20190241No hitNo description
PROSITE patternPS000360192207IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MASALQRSGV SFRRQGSSGM VWDDKYFLGE DGKVEVRDQL RPCQSVRETS TCTTALSNNT  60
APLATFPRSL STPAANTTIV FGALDDFLAH FPVLFVIDEE MQEQVTSSIA ASSLPSSSER  120
SSSSALQLEV KEGVESDEEI RRVPEIGGEP AGTSASGRDG GSTAGPDRVQ PSGEGQRKRG  180
RSPADKENKR LKRLLRNRVS AQQARERKKA YLNELETRVK DLEKKNSELE ERLSTLQNEN  240
QMLRHILKNT TASRRGGGDT NADGAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2oqq_A5e-17210249342Transcription factor HY5
2oqq_B5e-17210249342Transcription factor HY5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269|PubMed:15178762}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1766795e-39AY176679.1 Brassica rapa subsp. pekinensis HY5 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021670973.16e-91transcription factor HY5-like isoform X5
SwissprotQ9SM506e-69HY5_SOLLC; Transcription factor HY5
TrEMBLA0A2H5NY714e-88A0A2H5NY71_CITUN; Uncharacterized protein
TrEMBLV4UHN04e-88V4UHN0_9ROSI; Uncharacterized protein
STRINGXP_006483336.16e-89(Citrus sinensis)
STRINGXP_006450470.16e-89(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56912749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.12e-58bZIP family protein
Publications ? help Back to Top
  1. Wang F, et al.
    Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato.
    Plant Physiol., 2018. 176(2): p. 1311-1326
    [PMID:29146776]
  2. Liu CC, et al.
    The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato.
    Plant Cell Environ., 2018. 41(8): p. 1762-1775
    [PMID:29566255]