PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_9504_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

ZF-HD

Protein Properties

Length: 171aa MW: 19307.7 Da PI: 8.774

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_9504_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	98.4	5.5e-31	2	55	4	58
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 vrYkeClkNhAa++Gg+a+DGCgEfmp ge+gt++alkC+AC+CHRnFHR+eve Neem_9504_f_1 2 VRYKECLKNHAAAIGGNATDGCGEFMPG-GEHGTIEALKCSACNCHRNFHRKEVE 55 89***********************9.999******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.0E-28	2	54	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	4.0E-23	2	55	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.4E-30	3	54	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.68	4	53	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	4.5E-21	111	168	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.85E-11	114	168	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	7.4E-20	119	168	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MVRYKECLKN HAAAIGGNAT DGCGEFMPGG EHGTIEALKC SACNCHRNFH RKEVECDSSS 60 HFQCRFIFSP YHHQIQNPPG HHQHQVVSGR SGSVRSESDE KEDGGGAAAV AKAGERSVRK 120 RFRTKFTQEQ KEKMMKFADK AEWRIQKLEE SVVQQFCQEI GIKRRVLKSS E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	6e-15	120	168	18	66	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269\|PubMed:22319055}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by exposure to long days. {ECO:0000269\|PubMed:22319055}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022774073.1	4e-70	zinc-finger homeodomain protein 4-like
Swissprot	Q9M9S0	2e-56	ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBL	A0A1R3J6C3	1e-69	A0A1R3J6C3_COCAP; Uncharacterized protein
STRING	EOX92784	2e-69	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3339	26	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	3e-53	homeobox protein 31