PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_9584_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB

Protein Properties

Length: 88aa MW: 10294.9 Da PI: 10.3591

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_9584_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50	6.9e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l++++k +G +W+ ++ g+ R++k+c++rw++yl Neem_9584_f_1 14 KGAWTAEEDRKLINYIKIYGIWNWTEMPKAAGLLRSGKSCRLRWLNYL 61 79****************99******99***********7 PP
2	Myb_DNA-binding	21.6	5.1e-07	67	88	1	22
TSSS-HHHHHHHHHHHHHTTTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg 22 rg++++eEde++++++++lG++ Neem_9584_f_1 67 RGNFSPEEDEIIIKVHEKLGNR 88 89******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.717	9	65	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-22	9	64	IPR009057	Homeodomain-like
SMART	SM00717	4.6E-12	13	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.19E-23	15	88	IPR009057	Homeodomain-like
CDD	cd00167	8.82E-10	16	61	No hit	No description
Pfam	PF13921	6.1E-15	17	76	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-10	65	88	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.293	66	88	IPR017930	Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
MAKVSVYGNT SLRKGAWTAE EDRKLINYIK IYGIWNWTEM PKAAGLLRSG KSCRLRWLNY 60 LRPDIKRGNF SPEEDEIIIK VHEKLGNR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	5e-18	9	88	22	100	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269\|PubMed:24415840}.
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:24415840}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006449185.2	2e-40	myb-related protein 308
Refseq	XP_006467925.1	3e-40	myb-related protein 308-like isoform X1
Swissprot	P81395	5e-34	MYB30_ANTMA; Myb-related protein 330
Swissprot	Q9SJX8	3e-34	MYB14_ARATH; Transcription factor MYB14
TrEMBL	A0A067GJW7	3e-40	A0A067GJW7_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006467925.1	1e-39	(Citrus sinensis)
STRING	XP_006449185.1	1e-40	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	1e-36	myb domain protein 14

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903] Chen Y, et al. AtMYB14 Regulates Cold Tolerance in Arabidopsis. Plant Mol. Biol. Rep., 2013. 31: p. 87-97 [PMID:24415840]