PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9613_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 560aa    MW: 63277.8 Da    PI: 4.6301
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9613_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS129.44.1e-401965592374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL +  eav++++ ela+ ++  lse +sp+g++++Rla+     L+    ++++ l      +e+    s++   a+k+f++++P+ +f+h++
  Neem_9613_f_2 196 LHLLKAYGEAVEKKQRELAEVIIRCLSEKVSPAGETLERLAFN----LSPDSEKQGDYLI-----QES----SKNFEVAFKAFYQIFPYGRFAHFA 278
                    58899999*********************************96....4444444333333.....333....456777899*************** PP

           GRAS  98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrle 187
                    aN+aIlea+  + e + i+Dfd+++G+QWp+ ++a+a +   + +lR+T ++ ++++      + + eet+++L ++A+ +gv+++ + +    +e
  Neem_9613_f_2 279 ANSAILEAMPDDaEVIRIVDFDMGEGIQWPPVIEAIAGQ---SKTLRLTSINIEDKDvacapWHWSFEETRKQLCDYARCFGVKLKVEEM---GIE 368
                    *********9885777*********************85...567*******9999899998899***********************97...566 PP

           GRAS 188 dleleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvksl...sPkvvvvveqeadh...nsesFlerflealeyysalfdslea 273
                    dl  e+  +k+    gE l+ n+++ l ++   +  ++++ +++L++  ++   +  +++  + +a       + F   f   le+y al++s+++
  Neem_9613_f_2 369 DLVREKKTMKKrrgcGEWLVFNCMVGLPHMG--RNRSRKHVKDFLQVAEEIlsyNRGIITSGDGDACEkltWCSGFGSFFEGYLEHYQALLESMKS 462
                    664444333334589***************8..444444578899877765222678999999985431223347777777789************ PP

           GRAS 274 klpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpL 367
                    ++p +  e+r+ ++  ++++ i+     +g    ++ e+ ++  +     G+k+ +++ ++ ++ak +++  ++ + ++  ++ ++l+l W++ pL
  Neem_9613_f_2 463 SIPIHLaEARMAMDCLFVAPYIS----SQGWF--QKWEEIRQGCHLQAGIGLKECKVNRDILMEAKEMVNGESKYEVTIGgKSGNELILEWRGTPL 552
                    **998768888888887777665....55554..666788888899999*********************999555666578899999******** PP

           GRAS 368 vsvSaWr 374
                    v vS Wr
  Neem_9613_f_2 553 VRVSGWR 559
                    ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098521.102169538IPR005202Transcription factor GRAS
PfamPF035141.4E-37196559IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MSLAISHHAT PENLSLYSFI FHEPAKKKED DLRGNLAGMK LCERRARVIE FLQPSWPFYN  60
AINPSLDQPC ADDCGFSSNS FTSKDDCAEF FSLPNSSSVF SSEFVQFPAC IDDEVQAMME  120
EFSMELERFE PVFGDEVKNF CASFENSEGS FPSELSPEME NVWSPSLSTK SSEGSMDTAL  180
TLPGEDMEID NQLGILHLLK AYGEAVEKKQ RELAEVIIRC LSEKVSPAGE TLERLAFNLS  240
PDSEKQGDYL IQESSKNFEV AFKAFYQIFP YGRFAHFAAN SAILEAMPDD AEVIRIVDFD  300
MGEGIQWPPV IEAIAGQSKT LRLTSINIED KDVACAPWHW SFEETRKQLC DYARCFGVKL  360
KVEEMGIEDL VREKKTMKKR RGCGEWLVFN CMVGLPHMGR NRSRKHVKDF LQVAEEILSY  420
NRGIITSGDG DACEKLTWCS GFGSFFEGYL EHYQALLESM KSSIPIHLAE ARMAMDCLFV  480
APYISSQGWF QKWEEIRQGC HLQAGIGLKE CKVNRDILME AKEMVNGESK YEVTIGGKSG  540
NELILEWRGT PLVRVSGWRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1421355921375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006481093.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A2H5MVT70.0A0A2H5MVT7_CITUN; Uncharacterized protein
STRINGXP_006481093.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143441021
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.19e-20GRAS family protein