PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9646_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 257aa    MW: 28489.3 Da    PI: 4.644
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9646_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.7e-0810342248
                     T-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48
                     + W++Ia++++  Rt++++k++w+++l
    Neem_9646_f_1 10 R-WAAIASYLP-QRTDNDIKNYWNTHL 34
                     4.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.669138IPR017930Myb domain
SuperFamilySSF466894.52E-8940IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-13947IPR009057Homeodomain-like
PfamPF002498.5E-71034IPR001005SANT/Myb domain
CDDcd001671.15E-51033No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEYLMILMYR WAAIASYLPQ RTDNDIKNYW NTHLKKKLKK LQAGSEDHSR DGLSTNSQQI  60
SRGQWERRLQ TDIHMARQAL YEALSPEKPS FLSEFKPSNG FTSSAKSAAE ASTYASSTEN  120
IAKLLKGWAR NSPKSAACTN SAATQNSVNN NIAAAGAEST SSEGTPSKAE AADNNNGTEL  180
SETFESFFGL ESLDSSNSDL SQSVTPESSF LQDERKQEIP SAQMPQLSLL EKWLFEDQGG  240
KDYLITDLKL DEDTDIF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431144.11e-103myb-related protein 306
TrEMBLV4UX791e-101V4UX79_9ROSI; Uncharacterized protein
STRINGXP_006431144.11e-102(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.13e-41myb domain protein 30