PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9758_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 185aa    MW: 21490.9 Da    PI: 6.3971
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9758_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.35.2e-1687145563
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                    +++rr+++NRe+ArrsR RK++ ++eL   v  L +eN++L+++l++ ++  +k+ +e+
  Neem_9758_f_1  87 RKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLIDKLNHVSECHDKVLQEN 145
                    689********************************************999888888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.1E-1583147IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.35885148IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.13E-1487136No hitNo description
Gene3DG3DSA:1.20.5.1702.2E-1387160No hitNo description
PfamPF001703.4E-1487145IPR004827Basic-leucine zipper domain
CDDcd147028.26E-1988139No hitNo description
PROSITE patternPS00036090105IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MQPVSEVSGL HYLLPPSLSQ YSPHFSMNTS QNNSSPSSQF NRFLNPLLNF HRIPPQVPEF  60
NPQSSSLSSN STSDEAEEQQ QTIINERKQR RMISNRESAR RSRMRKQKHL DELWSQVVWL  120
RNENHQLIDK LNHVSECHDK VLQENAQLKE EATELRQMLS DMQFNSPYSS LKDLEDVSLN  180
SDLLG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199106RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00389DAPTransfer from AT3G30530Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430890.22e-90basic leucine zipper 43
SwissprotQ9FMC28e-48BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A2H5P1K82e-88A0A2H5P1K8_CITUN; Uncharacterized protein
STRINGXP_006482346.13e-89(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.13e-52basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]