PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9840_f_4
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 550aa    MW: 61888.8 Da    PI: 6.1941
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9840_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3373.3e-1031925492374
           GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    +++++++ e +++g+  laq +Larl+++ +sp g+p+qR+a+yf+eAL++ l+       ++ ++s+ s +n + +++a+k fse+sPil+f+++
  Neem_9840_f_4 192 IDQVFKATELIETGNPVLAQGILARLNHQlSSPIGKPFQRAAFYFKEALQSLLHM-----NSTNNTSTLSAYNIIFKISAYKSFSEISPILQFANF 282
                    678999*********************998***********************98.....7788999999999*********************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    t+Nqa+lea+eg++r+HiiDfdi++G+QW++L+q+L  R++g+psl+iT+++sp+++++ e+  t+e+L++fA+e+++pfef++l   ++ +   +
  Neem_9840_f_4 283 TCNQALLEALEGCSRIHIIDFDIGYGGQWASLMQELVLRSQGTPSLKITAFASPSTHNELEMGFTQENLKHFASEIDMPFEFEILGL-ECLNSASW 377
                    ************************************************************************************833.33333578 PP

           GRAS 193 eLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                     Lr++  +E++aVnl +  ++ +      +s+ + vL++vk+lsPk+vv  ++ +d+++ +F +++++al+ ys l++sl+a    + ++ +k+Er
  Neem_9840_f_4 378 PLRLQLeNEVIAVNLPIGSFSNY------PSTLPLVLRFVKQLSPKIVVSLDRGCDRTDVPFPHHIIHALQSYSGLLESLDAV-NVNLDALQKIER 466
                    9999978**********888877......445567*********************************************665.3566999***** PP

           GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     l+ + i+++v  +++      e+l  W+  ++++GF p+++s+++++qa++l+++++++g++ve+++ +lvl+W++++L+s++aWr
  Neem_9840_f_4 467 LLIYPCIEQIVLGRHRT----PERLPPWKTLFMQSGFAPLAFSNFTESQADCLVQRTPVRGFHVEKRQSALVLCWQRKELISATAWR 549
                    ************99998....9****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.871165529IPR005202Transcription factor GRAS
PfamPF035141.2E-100192549IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MEDWESVLSG SPSQEQSILR LIMGDMDDPS MGLNKILQTG SVSHQDMEFN AATNLLPVSL  60
SPSVFQQQQL QQPIDALDEK PQIFNSQLII NQNQAQYTQN PALFLPLSYA QLQEHPLLSP  120
PPPKRLNLGP NNQAPKVPFS DSGQQELFHR RQQQQQLQML QQRQTMGVAA TTTKQKMVND  180
ELANQQLQQA IIDQVFKATE LIETGNPVLA QGILARLNHQ LSSPIGKPFQ RAAFYFKEAL  240
QSLLHMNSTN NTSTLSAYNI IFKISAYKSF SEISPILQFA NFTCNQALLE ALEGCSRIHI  300
IDFDIGYGGQ WASLMQELVL RSQGTPSLKI TAFASPSTHN ELEMGFTQEN LKHFASEIDM  360
PFEFEILGLE CLNSASWPLR LQLENEVIAV NLPIGSFSNY PSTLPLVLRF VKQLSPKIVV  420
SLDRGCDRTD VPFPHHIIHA LQSYSGLLES LDAVNVNLDA LQKIERLLIY PCIEQIVLGR  480
HRTPERLPPW KTLFMQSGFA PLAFSNFTES QADCLVQRTP VRGFHVEKRQ SALVLCWQRK  540
ELISATAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-3320654918375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445316.10.0scarecrow-like protein 6
RefseqXP_006490864.10.0scarecrow-like protein 6
SwissprotO813161e-158SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A067H1870.0A0A067H187_CITSI; Uncharacterized protein
TrEMBLV4U8M80.0V4U8M8_9ROSI; Uncharacterized protein
STRINGXP_006490864.10.0(Citrus sinensis)
STRINGXP_006445316.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85742739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-160GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]