PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9865_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GATA
Protein Properties Length: 355aa    MW: 38950.2 Da    PI: 6.3463
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9865_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17254288135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Neem_9865_f_3 254 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 288
                    99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.4E-7716340IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.558248284IPR000679Zinc finger, GATA-type
SMARTSM004014.7E-18248298IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-15249312No hitNo description
Gene3DG3DSA:3.30.50.101.2E-14249285IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.48E-13253300No hitNo description
PfamPF003201.3E-15254288IPR000679Zinc finger, GATA-type
PROSITE patternPS003440254279IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEAPEFFQGN YCSLFSAEKH HPFDSKTNGG DHFIVEELLD FSNEDAVVTD GGAFDNVTGN  60
STDSSTVTVV DSCNSSSFSG CEPNFAGDVG CRNFSDGHFS SDLCVPYDDL AELEWLSNFV  120
EESFSCEDLQ KLQLISGMKA RSDESSETRQ FQPELNRNND SSHININTNP NNPIFHPEMA  180
VPAKARSKRS RAAPCNWASR LLVLSPTSSS SEPEVIATAP PPPPPPSSGK KTVKAAGSKK  240
KEGGDEGNGE GRKCLHCATD KTPQWRTGPM GPKTLCNACG VRYKSGRLVP EYRPAASPTF  300
VLTKHSNSHR KVLELRRQKE MLRAQQQQQP HTLAPISGSL YDLVDARVGK FWWSF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450704.10.0GATA transcription factor 12
SwissprotP697811e-85GAT12_ARATH; GATA transcription factor 12
TrEMBLV4WC040.0V4WC04_9ROSI; GATA transcription factor
STRINGXP_006450704.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66252644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-66GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]