PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Ctg00317g00003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 113aa MW: 12555.2 Da PI: 4.4304

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Ctg00317g00003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	43.4	1e-13	3	49	50	96
DUF260 50 peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 p ++reda+ s+vyeA ar+rdP yG+vg+i++lq+++ +l++el++ Niben101Ctg00317g00003.1 3 PVDNREDAVISMVYEATARLRDPAYGCVGIISALQKHVFHLQSELNE 49 6789****************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.476	1	54	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.4E-13	2	49	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
EIPVDNREDA VISMVYEATA RLRDPAYGCV GIISALQKHV FHLQSELNEA LGSPFTPENH 60 AFLHFQKPSE QNAYADASDT LLLLPEAAGN HCPQDNQVLL PLQYWPFIQL AAI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009631247.2	9e-55	PREDICTED: LOB domain-containing protein 4-like
TrEMBL	A0A1S4CR38	1e-51	A0A1S4CR38_TOBAC; LOB domain-containing protein 25-like isoform X2
TrEMBL	A0A1S4CRC5	1e-51	A0A1S4CRC5_TOBAC; LOB domain-containing protein 25-like isoform X1
STRING	XP_009631247.1	4e-45	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13147	14	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	4e-15	LOB domain-containing protein 25