PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Ctg00579g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 78aa MW: 8731.91 Da PI: 3.9025

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Ctg00579g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	25.9	2.7e-08	1	32	69	100
DUF260 69 ardPvyGavgvilklqqqleqlkaelallkee 100 +rdPvyG+vg i+ lq+q++ql+ +la++++e Niben101Ctg00579g00001.1 1 MRDPVYGCVGAISYLQNQVSQLEMQLAMAQTE 32 69*************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	4.2E-6	2	30	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 78 aa Download sequence Send to blast
MRDPVYGCVG AISYLQNQVS QLEMQLAMAQ TEILCIQMQQ ESAPNLPAIQ MEQYDGSTPQ 60 AMSFGNPNYL VAGEEFRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019240841.1	3e-49	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q8LBW3	3e-18	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A1J6JRW5	6e-48	A0A1J6JRW5_NICAT; Lob domain-containing protein 12
STRING	XP_009784491.1	7e-47	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-20	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]