PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Ctg01201g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 134aa MW: 14750.1 Da PI: 9.0241

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Ctg01201g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	85.1	9.8e-27	1	98	6	98
DUF260 6 kvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a p+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql Niben101Ctg01201g00001.1 1 RVLRKGCSESCSIRPCLqwiktPESQSNATVFLAKFYGRAGLMNLINAGPDPLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWQL 87 689********************************************************************************** PP DUF260 88 eqlkaelallk 98 +q ++e +l + Niben101Ctg01201g00001.1 88 CQNAVEDVLKG 98 999877665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.1E-20	1	93	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	14.216	1	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
RVLRKGCSES CSIRPCLQWI KTPESQSNAT VFLAKFYGRA GLMNLINAGP DPLRPAIFRS 60 LLYEACGRIV NPIYGSVGLL WSGNWQLCQN AVEDVLKGAP ITPITSEVAV NNNGPPLKLP 120 YDIRHINKDD NAIK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009801662.1	4e-93	PREDICTED: LOB domain-containing protein 41-like
Refseq	XP_016495337.1	4e-93	PREDICTED: LOB domain-containing protein 41-like
Swissprot	Q9M886	2e-75	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A1S4C2G1	9e-92	A0A1S4C2G1_TOBAC; LOB domain-containing protein 41-like
TrEMBL	A0A1U7YC06	9e-92	A0A1U7YC06_NICSY; LOB domain-containing protein 41-like
STRING	XP_009801662.1	1e-92	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	8e-78	LOB domain-containing protein 41