PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Ctg03201g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 107aa MW: 12718.5 Da PI: 8.3286

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Ctg03201g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	87	3.1e-27	2	104	271	373
GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355 ++a+lpr++++r E+e+ +re++nv+aceg+er+er et+++W+ r ++aGFk +pl+++ +++ ++ ++ + + + +e+ Niben101Ctg03201g00001.1 2 FDATLPRDDQQRLHFEQEFYRREAMNVIACEGSERVERPETYKQWQVRNMRAGFKLLPLNQQLMQKLSCKVKGGYHRDFVFDEDG 86 5899********************************************************************9999*** PP GRAS 356 gslvlgWkdrpLvsvSaW 373 +++++gWk+r L S+W Niben101Ctg03201g00001.1 87 NWMLQGWKGRVLCGSSCW 104 **************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	16.453	1	85	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-24	2	104	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
MFDATLPRDD QQRLHFEQEF YRREAMNVIA CEGSERVERP ETYKQWQVRN MRAGFKLLPL 60 NQQLMQKLSC KVKGGYHRDF VFDEDGNWML QGWKGRVLCG SSCWVPA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009606498.1	2e-71	PREDICTED: scarecrow-like protein 14
Refseq	XP_016485888.1	2e-71	PREDICTED: scarecrow-like protein 14
Refseq	XP_016488598.1	4e-73	PREDICTED: scarecrow-like protein 14, partial
Swissprot	Q3EDH0	7e-44	SCL31_ARATH; Scarecrow-like protein 31
Swissprot	Q9XE58	8e-44	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A1S4BAP2	5e-70	A0A1S4BAP2_TOBAC; scarecrow-like protein 14
TrEMBL	A0A1S4BI92	1e-71	A0A1S4BI92_TOBAC; scarecrow-like protein 14
STRING	XP_009606498.1	8e-71	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	3e-46	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]