PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Ctg03622g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 104aa    MW: 11576.5 Da    PI: 8.5195
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Ctg03622g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer22.33.1e-072233657
               ZF-HD_dimer 36 gtaaalkCaACgCHRnFHRrev 57
                              gt+ +  Ca CgC R+FHR ++
  Niben101Ctg03622g00002.1  2 GTKGSYICANCGCIRSFHRMNN 23
                              6778999************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.2E-5223IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
DGTKGSYICA NCGCIRSFHR MNNQPLHRHQ AIRLCFFHHC VIPNGIQPIF HPFMATAGKT  60
QVSVFTAFLP DEMGPVPVPL PLFRETSSSG TFGILKGKQN MDME
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A314LBP53e-39A0A314LBP5_NICAT; Mini zinc finger protein 4
STRINGPGSC0003DMT4000868603e-12(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13748615