PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Ctg04686g00002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 204aa MW: 22704.9 Da PI: 6.6323

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Ctg04686g00002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	267.6	4.1e-82	2	204	84	285
GRAS 84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166 ++e++P++kf+++ aN aI ea++ e+rvHiiDf+i qG QW++L+qa+a+Rp+gpp++R+Tg+++++s + l+ +g+rL+ Niben101Ctg04686g00002.1 2 LYEICPYFKFGYMSANGAIAEAMKDENRVHIIDFQIAQGSQWVTLIQAFAARPGGPPHIRVTGIDDSTSAyaRGGGLNIVGQRLS 86 89**************************************************************998899999****** PP GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251 k+A++++vpfef++ +a + +d+++e+L ++pgEalaVn+++ lh+++desvs+e++rd++L++vk+l+Pkvv++veqe+++n++ Niben101Ctg04686g00002.1 87 KLAKAFKVPFEFHA-AAISGSDVQVENLGIQPGEALAVNFAFTLHHMPDESVSTENHRDRLLRMVKNLNPKVVTLVEQESNTNTA 170 **********.8999************************************************************** PP GRAS 252 sFlerflealeyysalfdsleaklpreseerikv 285 F+ rfle+l+yy+a+f+s++++lpr ++eri+v Niben101Ctg04686g00002.1 171 AFFPRFLETLDYYTAMFESIDMTLPRGHKERINV 204 *****************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	47.973	1	204	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-79	2	204	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MLYEICPYFK FGYMSANGAI AEAMKDENRV HIIDFQIAQG SQWVTLIQAF AARPGGPPHI 60 RVTGIDDSTS AYARGGGLNI VGQRLSKLAK AFKVPFEFHA AAISGSDVQV ENLGIQPGEA 120 LAVNFAFTLH HMPDESVSTE NHRDRLLRMV KNLNPKVVTL VEQESNTNTA AFFPRFLETL 180 DYYTAMFESI DMTLPRGHKE RINV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	9e-42	2	204	83	283	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269\|PubMed:10817761}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009605526.1	1e-150	PREDICTED: scarecrow-like transcription factor PAT1
Refseq	XP_009605527.1	1e-150	PREDICTED: scarecrow-like transcription factor PAT1
Refseq	XP_009605528.1	1e-150	PREDICTED: scarecrow-like transcription factor PAT1
Refseq	XP_018627583.1	1e-150	PREDICTED: scarecrow-like transcription factor PAT1
Refseq	XP_018627584.1	1e-150	PREDICTED: scarecrow-like transcription factor PAT1
Swissprot	Q9LDL7	1e-123	PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBL	A0A1S4APW1	1e-148	A0A1S4APW1_TOBAC; scarecrow-like transcription factor PAT1
STRING	XP_009605526.1	1e-149	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	1e-126	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Heyman J, et al. The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence. Nat Plants, 2016. 2(11): p. 16165 [PMID:27797356]