PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Ctg04754g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 108aa    MW: 12501.7 Da    PI: 10.8384
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Ctg04754g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.8e-077098331
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartm 31
                              +W++ E++ l  +v+++G+g+W+ I +t 
  Niben101Ctg04754g00003.1 70 KWSALEEDTLRTGVQKYGSGNWTHILNTY 98
                              8************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.54E-965107IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-76997IPR009057Homeodomain-like
CDDcd116601.11E-970108No hitNo description
PfamPF002497.8E-67096IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MVKGKLMAAL CLLMVKTLIC VQRDDSADEL NEGSRSSMRR FSLPSPKRMK ISPLKKYEFK  60
KFTTRRKPTK WSALEEDTLR TGVQKYGSGN WTHILNTYRD IFVVRTAV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772851.12e-49PREDICTED: uncharacterized protein LOC104223173
RefseqXP_016477615.12e-49PREDICTED: uncharacterized protein LOC107799057
TrEMBLA0A1S4ALX65e-48A0A1S4ALX6_TOBAC; uncharacterized protein LOC107799057
TrEMBLA0A1U7W6M45e-48A0A1U7W6M4_NICSY; uncharacterized protein LOC104223173
STRINGXP_009772851.19e-49(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37742439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.11e-09TRF-like 5