PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Ctg06121g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 189aa    MW: 21797.2 Da    PI: 7.1628
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Ctg06121g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74.2e-08144164526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                C+ f++ G C+ Gd+C FaHg
  Niben101Ctg06121g00002.1 144 ACPEFRK-GNCRKGDSCEFAHG 164
                               7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.4E-6139165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-5139168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.479140166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-5144166IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-6144164IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MMIGERNHPY PTVHIPPWSY GDNQTDNMHL TLSPSSNANS SPSFSAASGE DYSMFLQNDT  60
GLKALQRYLP FNDVVGDFDF EYGDGRDVDL PVDEYSCDQF RMYEFKVRKC ARGKSHDWTE  120
CPYAHPGEKA RRRDPLKYHY SGTACPEFRK GNCRKGDSCE FAHGVFECWL HPARYRTQPC  180
KDGLNCKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791791.11e-136PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G27e-73C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A1U7XQ971e-135A0A1U7XQ97_NICSY; zinc finger CCCH domain-containing protein 20-like
STRINGXP_009791791.11e-135(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.15e-74C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]